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非连续完成的基因组序列及新种嗜土类芽孢杆菌菌株AT5的描述

Noncontiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5.

作者信息

Togo A H, Khelaifia S, Lagier J-C, Caputo A, Robert C, Fournier P-E, Maraninchi M, Valero R, Raoult D, Million M

机构信息

Aix Marseille Université, URMITE, Institut Hospitalier Universitaire Méditerranée-Infection, UM63, CNRS7278, IRD198, INSERM1095, Marseille, France.

Aix Marseille Université, NORT "Nutrition, Obesity and Risk of Thrombosis", INSERM1062, INRA1260, Marseille, France.

出版信息

New Microbes New Infect. 2016 Jan 29;10:142-50. doi: 10.1016/j.nmni.2016.01.013. eCollection 2016 Mar.

DOI:10.1016/j.nmni.2016.01.013
PMID:26958346
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4773480/
Abstract

Paenibacillus ihumii sp. nov. strain AT5 (= CSUR 1981 = DSM 100664) is the type strain of P. ihumii. This bacterium was isolated from a stool sample from a morbidly obese French patient using the culturomics approach. The genome of this Gram-negative, facultative anaerobic, motile and spore-forming bacillus is 5 924 686 bp long. Genomic analysis identified 253 (5%) of 3812 genes as ORFans and at least 2599 (50.03%) of 5194 orthologous proteins not shared with the closest phylogenetic species.

摘要

伊胡米芽孢杆菌新种菌株AT5（= CSUR 1981 = DSM 100664）是伊胡米芽孢杆菌的模式菌株。该细菌是采用 culturomics 方法从一名病态肥胖的法国患者的粪便样本中分离出来的。这种革兰氏阴性、兼性厌氧、运动且产芽孢的杆菌基因组长度为5924686 bp。基因组分析确定，3812个基因中有253个（5%）为孤儿基因，5194个直系同源蛋白中至少有2599个（50.03%）与最近的系统发育物种不共享。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/397f/4773480/4be122329a83/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/397f/4773480/535ba1c5c0f1/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/397f/4773480/22cc9e1943fb/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/397f/4773480/3f60fb8553a4/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/397f/4773480/4be122329a83/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/397f/4773480/535ba1c5c0f1/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/397f/4773480/22cc9e1943fb/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/397f/4773480/3f60fb8553a4/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/397f/4773480/4be122329a83/gr7.jpg

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