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2
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本文引用的文献

1
Proteome profile and proteogenomics of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor.有机卤化物呼吸菌 Dehalococcoides mccartyi 菌株 CBDB1 以六氯苯作为电子受体时的蛋白质组图谱和蛋白质基因组学。
J Proteomics. 2014 Feb 26;98:59-64. doi: 10.1016/j.jprot.2013.12.009. Epub 2013 Dec 25.
2
Stable isotope peptide mass spectrometry to decipher amino acid metabolism in Dehalococcoides strain CBDB1.稳定同位素肽质量光谱法解析 Dehalococcoides 菌株 CBDB1 的氨基酸代谢。
J Bacteriol. 2012 Aug;194(16):4169-77. doi: 10.1128/JB.00049-12. Epub 2012 Jun 1.
3
Identification and characterization of a re-citrate synthase in Dehalococcoides strain CBDB1.鉴定和表征 Dehalococcoides 菌株 CBDB1 中的再柠檬酸合酶。
J Bacteriol. 2011 Oct;193(19):5171-8. doi: 10.1128/JB.05120-11. Epub 2011 Jul 22.
4
Transcription analysis of genes encoding homologues of reductive dehalogenases in "Dehalococcoides" sp. strain CBDB1 by using terminal restriction fragment length polymorphism and quantitative PCR.利用末端限制性片段长度多态性和定量PCR技术对“脱卤球菌”属菌株CBDB1中编码还原性脱卤酶同源物的基因进行转录分析。
Appl Environ Microbiol. 2009 Apr;75(7):1876-84. doi: 10.1128/AEM.01042-08. Epub 2009 Feb 5.
5
Building consensus spectral libraries for peptide identification in proteomics.构建用于蛋白质组学中肽段鉴定的一致性光谱库。
Nat Methods. 2008 Oct;5(10):873-5. doi: 10.1038/nmeth.1254. Epub 2008 Sep 21.
6
Dehalorespiration with hexachlorobenzene and pentachlorobenzene by Dehalococcoides sp. strain CBDB1.脱卤球菌属菌株CBDB1对六氯苯和五氯苯的脱卤呼吸作用
Arch Microbiol. 2003 Dec;180(6):411-6. doi: 10.1007/s00203-003-0607-7. Epub 2003 Oct 16.

以六氯苯作为电子受体生长的有机卤呼吸细菌麦氏脱卤球菌菌株CBDB1的蛋白质组数据集。

Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor.

作者信息

Schiffmann Christian L, Otto Wolfgang, Hansen Rasmus, Nielsen Per Halkjær, Adrian Lorenz, Seifert Jana, von Bergen Martin, Jehmlich Nico

机构信息

Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research-UFZ, Permoserstr. 15, 04318 Leipzig, Germany.

Aalborg University, Department of Biotechnology, Chemistry and Environmental Engineering, Sohngårdsholmsvej 49, 9000 Aalborg, Denmark.

出版信息

Data Brief. 2016 Feb 22;7:253-6. doi: 10.1016/j.dib.2016.02.037. eCollection 2016 Jun.

DOI:10.1016/j.dib.2016.02.037
PMID:26958645
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4773567/
Abstract

The proteome of the anaerobic organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 was analyzed by nano liquid chromatography coupled to mass spectrometry (LC-MS/MS). Two different preparation methods, (i) in-solution and (ii) in-gel proteolytic digestion were assessed to elucidate the core and the functional proteome of bacterial cultures grown in synthetic anaerobic medium with hexachlorobenzene as sole electron acceptor. A detailed analysis of the data presented is available (Schiffmann et al., 2014) [1].

摘要

通过纳升液相色谱-质谱联用(LC-MS/MS)分析了厌氧有机卤化物呼吸细菌麦氏脱卤球菌菌株CBDB1的蛋白质组。评估了两种不同的制备方法,即(i)溶液内和(ii)胶内蛋白酶解,以阐明在以六氯苯作为唯一电子受体的合成厌氧培养基中生长的细菌培养物的核心蛋白质组和功能蛋白质组。已提供对所呈现数据的详细分析(Schiffmann等人,2014年)[1]。