• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

亚细胞定位如何影响细菌信使核糖核酸的命运?

How does sub-cellular localization affect the fate of bacterial mRNA?

作者信息

Redder Peter

机构信息

Department of Microbiology and Molecular Medicine, Medical Faculty, University of Geneva, Rue Michel-Servet 1, 1211, Geneve 4, Switzerland.

出版信息

Curr Genet. 2016 Nov;62(4):687-690. doi: 10.1007/s00294-016-0587-1. Epub 2016 Mar 14.

DOI:10.1007/s00294-016-0587-1
PMID:26972734
Abstract

Recently a number of seminal studies have revealed that both sequence and spatio-temporal factors govern RNA decay in bacteria, which is crucial for regulation of gene expression. Ribonucleases have been described that not only exhibit sequence preferences, but also are sub-cellularly localised. Furthermore, the RNA itself is distributed in an organised manner and does not diffuse freely or randomly within the bacterial cells. Thus, even within the sub-micrometer distances of the bacterial intra-cellular space, the positions of the enzymes and their substrates are kept in check. Adding to this complexity is the secondary structure and sequence specificity that many, perhaps all, ribonucleases exhibit, including those that are responsible for "general" RNA degradation. In this review, the implications of these novel findings are discussed and specific examples from Staphylococcus aureus are analysed.

摘要

最近,一些具有开创性的研究表明,序列和时空因素都对细菌中的RNA衰变起调控作用,而这对基因表达的调节至关重要。已发现核糖核酸酶不仅表现出序列偏好性,而且在亚细胞水平上有特定定位。此外,RNA本身以一种有组织的方式分布,不会在细菌细胞内自由扩散或随机扩散。因此,即使在细菌细胞内亚微米级的距离范围内,酶及其底物的位置也受到控制。许多(也许是所有)核糖核酸酶所表现出的二级结构和序列特异性,包括那些负责“一般”RNA降解的酶,进一步增加了这种复杂性。在这篇综述中,将讨论这些新发现的意义,并分析来自金黄色葡萄球菌的具体例子。

相似文献

1
How does sub-cellular localization affect the fate of bacterial mRNA?亚细胞定位如何影响细菌信使核糖核酸的命运?
Curr Genet. 2016 Nov;62(4):687-690. doi: 10.1007/s00294-016-0587-1. Epub 2016 Mar 14.
2
[A new target of antibacterial drugs: bacterial mRNA degradation pathways].[抗菌药物的新靶点:细菌mRNA降解途径]
Yi Chuan. 2013 Mar;35(3):324-32.
3
Dynamic Membrane Localization of RNase Y in Bacillus subtilis.RNase Y 在枯草芽孢杆菌中的动态膜定位。
mBio. 2020 Feb 18;11(1):e03337-19. doi: 10.1128/mBio.03337-19.
4
Downstream element determines RNase Y cleavage of the saePQRS operon in Staphylococcus aureus.下游元件决定金黄色葡萄球菌中saePQRS操纵子的RNase Y切割。
Nucleic Acids Res. 2017 Jun 2;45(10):5980-5994. doi: 10.1093/nar/gkx296.
5
Degradation of RNA in bacteria: comparison of mRNA and stable RNA.细菌中RNA的降解:信使核糖核酸与稳定RNA的比较
Nucleic Acids Res. 2006 Feb 1;34(2):659-66. doi: 10.1093/nar/gkj472. Print 2006.
6
Decay-Initiating Endoribonucleolytic Cleavage by RNase Y Is Kept under Tight Control via Sequence Preference and Sub-cellular Localisation.核糖核酸酶Y引发的衰变起始核糖核酸内切酶切割通过序列偏好和亚细胞定位受到严格控制。
PLoS Genet. 2015 Oct 16;11(10):e1005577. doi: 10.1371/journal.pgen.1005577. eCollection 2015 Oct.
7
Regulation of mRNA decay in .mRNA 降解的调控。
Crit Rev Biochem Mol Biol. 2022 Feb;57(1):48-72. doi: 10.1080/10409238.2021.1968784. Epub 2021 Sep 21.
8
Target activation by regulatory RNAs in bacteria.细菌中调控RNA对靶标的激活作用。
FEMS Microbiol Rev. 2015 May;39(3):362-78. doi: 10.1093/femsre/fuv016. Epub 2015 Apr 30.
9
DEAD-box RNA helicases in gram-positive RNA decay.革兰氏阳性菌RNA降解中的DEAD盒RNA解旋酶
Methods Enzymol. 2012;511:369-83. doi: 10.1016/B978-0-12-396546-2.00017-6.
10
Regulation of RNA processing and degradation in bacteria.细菌中 RNA 加工和降解的调控。
Biochim Biophys Acta Gene Regul Mech. 2020 May;1863(5):194505. doi: 10.1016/j.bbagrm.2020.194505. Epub 2020 Mar 6.

引用本文的文献

1
Organellar and Secretory Ribonucleases: Major Players in Plant RNA Homeostasis.细胞器和分泌性核糖核酸酶:植物 RNA 稳态中的主要参与者。
Plant Physiol. 2020 Aug;183(4):1438-1452. doi: 10.1104/pp.20.00076. Epub 2020 Jun 8.
2
RNA Localization in Bacteria.细菌中的 RNA 定位。
Microbiol Spectr. 2018 Sep;6(5). doi: 10.1128/microbiolspec.RWR-0024-2018.
3
The bacterial replisome has factory-like localization.细菌复制体具有类似工厂的定位。

本文引用的文献

1
Probing dimensionality beyond the linear sequence of mRNA.探索超越mRNA线性序列的维度。
Curr Genet. 2016 May;62(2):331-4. doi: 10.1007/s00294-015-0551-5. Epub 2015 Dec 9.
2
Dynamics of co-translational protein targeting.共翻译蛋白质靶向的动力学
Curr Opin Chem Biol. 2015 Dec;29:79-86. doi: 10.1016/j.cbpa.2015.09.016. Epub 2015 Oct 30.
3
Decay-Initiating Endoribonucleolytic Cleavage by RNase Y Is Kept under Tight Control via Sequence Preference and Sub-cellular Localisation.核糖核酸酶Y引发的衰变起始核糖核酸内切酶切割通过序列偏好和亚细胞定位受到严格控制。
Curr Genet. 2018 Oct;64(5):1029-1036. doi: 10.1007/s00294-018-0830-z. Epub 2018 Apr 9.
4
Survival of the drowsiest: the hibernating 100S ribosome in bacterial stress management.最困倦者的生存:细菌应激管理中的休眠 100S 核糖体。
Curr Genet. 2018 Aug;64(4):753-760. doi: 10.1007/s00294-017-0796-2. Epub 2017 Dec 14.
5
Chromosomal organization of transcription: in a nutshell.转录的染色体组织:简而言之。
Curr Genet. 2018 Jun;64(3):555-565. doi: 10.1007/s00294-017-0785-5. Epub 2017 Nov 28.
6
Visualizing translational errors: one cell at a time.可视化翻译错误:一次一个细胞。
Curr Genet. 2018 Jun;64(3):551-554. doi: 10.1007/s00294-017-0784-6. Epub 2017 Nov 20.
7
Transcription termination factor Rho and microbial phenotypic heterogeneity.转录终止因子Rho与微生物表型异质性
Curr Genet. 2018 Jun;64(3):541-546. doi: 10.1007/s00294-017-0775-7. Epub 2017 Nov 1.
8
The stability of an mRNA is influenced by its concentration: a potential physical mechanism to regulate gene expression.信使核糖核酸(mRNA)的稳定性受其浓度影响:这是一种调节基因表达的潜在物理机制。
Nucleic Acids Res. 2017 Nov 16;45(20):11711-11724. doi: 10.1093/nar/gkx781.
9
RNA search engines empower the bacterial intranet.RNA搜索引擎助力细菌内部网络。
Biochem Soc Trans. 2017 Aug 15;45(4):987-997. doi: 10.1042/BST20160373. Epub 2017 Jul 14.
10
Downstream element determines RNase Y cleavage of the saePQRS operon in Staphylococcus aureus.下游元件决定金黄色葡萄球菌中saePQRS操纵子的RNase Y切割。
Nucleic Acids Res. 2017 Jun 2;45(10):5980-5994. doi: 10.1093/nar/gkx296.
PLoS Genet. 2015 Oct 16;11(10):e1005577. doi: 10.1371/journal.pgen.1005577. eCollection 2015 Oct.
4
RNA degradosomes in bacteria and chloroplasts: classification, distribution and evolution of RNase E homologs.细菌和叶绿体中的RNA降解体:核糖核酸酶E同源物的分类、分布及进化
Mol Microbiol. 2015 Sep;97(6):1021-135. doi: 10.1111/mmi.13095. Epub 2015 Jul 22.
5
The C-terminal region of the RNA helicase CshA is required for the interaction with the degradosome and turnover of bulk RNA in the opportunistic pathogen Staphylococcus aureus.RNA解旋酶CshA的C末端区域是与机会致病菌金黄色葡萄球菌中的降解体相互作用以及大量RNA周转所必需的。
RNA Biol. 2015;12(6):658-74. doi: 10.1080/15476286.2015.1035505.
6
Using EMOTE to map the exact 5'-ends of processed RNA on a transcriptome-wide scale.使用EMOTE在全转录组范围内绘制加工后RNA的确切5'端图谱。
Methods Mol Biol. 2015;1259:69-85. doi: 10.1007/978-1-4939-2214-7_5.
7
Molecular recognition of RhlB and RNase D in the Caulobacter crescentus RNA degradosome.新月柄杆菌RNA降解体中RhlB和核糖核酸酶D的分子识别
Nucleic Acids Res. 2014 Dec 1;42(21):13294-305. doi: 10.1093/nar/gku1134. Epub 2014 Nov 11.
8
Direct entry by RNase E is a major pathway for the degradation and processing of RNA in Escherichia coli.核糖核酸酶E的直接进入是大肠杆菌中RNA降解和加工的主要途径。
Nucleic Acids Res. 2014 Oct;42(18):11733-51. doi: 10.1093/nar/gku808. Epub 2014 Sep 18.
9
Transcriptome-wide analyses of 5'-ends in RNase J mutants of a gram-positive pathogen reveal a role in RNA maturation, regulation and degradation.对革兰氏阳性病原体的核糖核酸酶J突变体中5'端进行全转录组分析,揭示了其在RNA成熟、调控和降解中的作用。
PLoS Genet. 2014 Feb 27;10(2):e1004207. doi: 10.1371/journal.pgen.1004207. eCollection 2014 Feb.
10
Initiation of mRNA decay in bacteria.在细菌中 mRNA 降解的起始。
Cell Mol Life Sci. 2014 May;71(10):1799-828. doi: 10.1007/s00018-013-1472-4. Epub 2013 Sep 25.