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从加拿大城市农业景观的地表水和沉积物中分离出的产志贺毒素大肠杆菌的表型和基因型特征

Phenotypic and Genotypic Characteristics of Shiga Toxin-Producing Escherichia coli Isolated from Surface Waters and Sediments in a Canadian Urban-Agricultural Landscape.

作者信息

Nadya Stephanie, Delaquis Pascal, Chen Jessica, Allen Kevin, Johnson Roger P, Ziebell Kim, Laing Chad, Gannon Victor, Bach Susan, Topp Edward

机构信息

Food, Nutrition and Health, Faculty of Land and Food Systems, University of British Columbia Vancouver, BC, Canada.

Agriculture and Agri-Food Canada, Summerland Research and Development Centre Summerland, BC, Canada.

出版信息

Front Cell Infect Microbiol. 2016 Apr 5;6:36. doi: 10.3389/fcimb.2016.00036. eCollection 2016.

DOI:10.3389/fcimb.2016.00036
PMID:27092297
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4820441/
Abstract

A hydrophobic grid membrane filtration-Shiga toxin immunoblot method was used to examine the prevalence of Shiga toxin-producing Escherichia coli (STEC) in four watersheds located in the Lower Mainland of British Columbia, Canada, a region characterized by rapid urbanization and intensive agricultural activity. STEC were recovered from 21.6, 23.2, 19.5, and 9.2% of surface water samples collected monthly from five sites in each watershed over a period of 1 year. Overall prevalence was subject to seasonal variation however, ranging between 13.3% during fall months and 34.3% during winter months. STEC were also recovered from 23.8% of sediment samples collected in one randomly selected site. One hundred distinct STEC isolates distributed among 29 definitive and 4 ambiguous or indeterminate serotypes were recovered from water and sediments, including isolates from Canadian "priority" serogroups O157 (3), O26 (4), O103 (5), and O111 (7). Forty seven isolates were further characterized by analysis of whole genome sequences to detect Shiga toxin gene (stx 1 and stx 2), intimin gene (eaeA) allelic variants and acquired virulence factors. These analyses collectively showed that surface waters from the region support highly diverse STEC populations that include strains with virulence factors commonly associated with human pathotypes. The present work served to characterize the microbiological hazard implied by STEC to support future assessments of risks to public health arising from non-agricultural and agricultural uses of surface water resources in the region.

摘要

采用疏水网格膜过滤-志贺毒素免疫印迹法,对加拿大不列颠哥伦比亚省低陆平原四个流域产志贺毒素大肠杆菌(STEC)的流行情况进行了检测。该地区城市化进程迅速,农业活动密集。在一年的时间里,每月从每个流域的五个地点采集地表水样本,STEC的检出率分别为21.6%、23.2%、19.5%和9.2%。总体流行率存在季节性变化,秋季为13.3%,冬季为34.3%。在一个随机选择的地点采集的沉积物样本中,STEC的检出率也为23.8%。从水和沉积物中分离出100株不同的STEC菌株,分布在29种确定型和4种模糊或不确定血清型中,包括来自加拿大“优先”血清群O157(3株)、O26(4株)、O103(5株)和O111(7株)的菌株。通过分析全基因组序列,对47株菌株进行了进一步鉴定,以检测志贺毒素基因(stx 1和stx 2)、紧密素基因(eaeA)等位基因变体和获得性毒力因子。这些分析共同表明,该地区的地表水支持高度多样化的STEC菌群,其中包括具有通常与人类致病型相关的毒力因子的菌株。本研究旨在描述STEC所隐含的微生物危害,以支持未来对该地区地表水资源非农业和农业用途对公众健康产生的风险进行评估。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb2c/4820441/99e8d8fadd46/fcimb-06-00036-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb2c/4820441/05ae7c435cad/fcimb-06-00036-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb2c/4820441/0fe15d74a9b0/fcimb-06-00036-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb2c/4820441/99e8d8fadd46/fcimb-06-00036-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb2c/4820441/05ae7c435cad/fcimb-06-00036-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb2c/4820441/0fe15d74a9b0/fcimb-06-00036-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb2c/4820441/99e8d8fadd46/fcimb-06-00036-g0003.jpg

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J Food Prot. 1996 Oct;59(10):1112-1122. doi: 10.4315/0362-028X-59.10.1112.
2
A systems analysis of irrigation water quality in environmental assessments related to foodborne outbreaks.与食源性疾病暴发相关的环境评估中灌溉水质的系统分析。
Aquat Procedia. 2013;2(2013):130-137. doi: 10.1016/j.aqpro.2013.07.011.
3
Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data.
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Antibiotics (Basel). 2021 Feb 26;10(3):237. doi: 10.3390/antibiotics10030237.
4
Multi-Year Persistence of Verotoxigenic (VTEC) in a Closed Canadian Beef Herd: A Cohort Study.加拿大一个封闭肉牛群中产志贺毒素大肠杆菌(VTEC)的多年持续性:一项队列研究
Front Microbiol. 2018 Aug 31;9:2040. doi: 10.3389/fmicb.2018.02040. eCollection 2018.
5
Comparative genomics reveals differences in mobile virulence genes of Escherichia coli O103 pathotypes of bovine fecal origin.比较基因组学揭示了源自牛粪便的大肠杆菌O103致病型移动毒力基因的差异。
PLoS One. 2018 Feb 1;13(2):e0191362. doi: 10.1371/journal.pone.0191362. eCollection 2018.
6
Occurrence, characterization, and potential predictors of verotoxigenic Escherichia coli, Listeria monocytogenes, and Salmonella in surface water used for produce irrigation in the Lower Mainland of British Columbia, Canada.加拿大不列颠哥伦比亚省低陆平原用于农产品灌溉的地表水中产志贺毒素大肠杆菌、单核细胞增生李斯特菌和沙门氏菌的发生、特征及潜在预测因素
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J Med Microbiol. 2014 Sep;63(Pt 9):1181-1188. doi: 10.1099/jmm.0.075895-0. Epub 2014 Jun 13.
7
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Foodborne Pathog Dis. 2014 Jun;11(6):447-55. doi: 10.1089/fpd.2013.1704. Epub 2014 Apr 21.
8
Prokka: rapid prokaryotic genome annotation.Prokka:快速的原核生物基因组注释。
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9
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Appl Environ Microbiol. 2014 Apr;80(7):2166-75. doi: 10.1128/AEM.03391-13. Epub 2014 Jan 31.