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KeyPathwayMinerWeb: online multi-omics network enrichment.
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De Novo Pathway Enrichment with KeyPathwayMiner.
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Efficient key pathway mining: combining networks and OMICS data.
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MetaPath Online: a web server implementation of the network expansion algorithm.
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FunRich: An open access standalone functional enrichment and interaction network analysis tool.
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Inferring active regulatory networks from gene expression data using a combination of prior knowledge and enrichment analysis.
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Robust de novo pathway enrichment with KeyPathwayMiner 5.
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Drug Repurposing for Kala-Azar.
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Mitotic Kinases Aurora-A, Plk1, and Cdk1 Interact with Elk-1 Transcription Factor through the N-Terminal Domain.
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Proteomic meta-study harmonization, mechanotyping and drug repurposing candidate prediction with ProHarMeD.
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KeyPathwayMineR: Pathway Enrichment in the R Ecosystem.
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CTCFL regulates the PI3K-Akt pathway and it is a target for personalized ovarian cancer therapy.
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The BioGRID interaction database: 2015 update.
Nucleic Acids Res. 2015 Jan;43(Database issue):D470-8. doi: 10.1093/nar/gku1204. Epub 2014 Nov 26.
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The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.
Nucleic Acids Res. 2014 Jan;42(Database issue):D358-63. doi: 10.1093/nar/gkt1115. Epub 2013 Nov 13.
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Data, information, knowledge and principle: back to metabolism in KEGG.
Nucleic Acids Res. 2014 Jan;42(Database issue):D199-205. doi: 10.1093/nar/gkt1076. Epub 2013 Nov 7.
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NetworkTrail--a web service for identifying and visualizing deregulated subnetworks.
Bioinformatics. 2013 Jul 1;29(13):1702-3. doi: 10.1093/bioinformatics/btt204. Epub 2013 Apr 26.
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The ConsensusPathDB interaction database: 2013 update.
Nucleic Acids Res. 2013 Jan;41(Database issue):D793-800. doi: 10.1093/nar/gks1055. Epub 2012 Nov 11.
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How little do we actually know? On the size of gene regulatory networks.
IEEE/ACM Trans Comput Biol Bioinform. 2012 Sep-Oct;9(5):1293-300. doi: 10.1109/TCBB.2012.71.

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