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植物粉末茶包:一种解决根际细菌可培养性和多样性的新颖实用方法。

Plant powder teabags: a novel and practical approach to resolve culturability and diversity of rhizobacteria.

作者信息

Sarhan Mohamed S, Mourad Elhussein F, Hamza Mervat A, Youssef Hanan H, Scherwinski Ann-Christin, El-Tahan Mahmoud, Fayez Mohamed, Ruppel Silke, Hegazi Nabil A

机构信息

Environmental Studies and Research Unit (ESRU), Department of Microbiology, Faculty of Agriculture, Cairo University, Giza, Egypt.

Leibniz Institute of Vegetable and Ornamental Crops Grossbeeren/Erfurt e.V. (IGZ), Grossbeeren, Germany.

出版信息

Physiol Plant. 2016 Aug;157(4):403-13. doi: 10.1111/ppl.12469. Epub 2016 Jun 6.

Abstract

We have developed teabags packed with dehydrated plant powders, without any supplements, for preparation of plant infusions necessary to develop media for culturing rhizobacteria. These bacteria are efficiently cultivated on such plant teabag culture media, with better progressive in situ recoverability compared to standard chemically synthetic culture media. Combining various plant-based culture media and incubation conditions enabled us to resolve unique denaturing gradient gel electrophoresis (DGGE) bands that were not resolved by tested standard culture media. Based on polymerase chain reaction PCR-DGGE of 16S rDNA fingerprints and sequencing, the plant teabag culture media supported higher diversity and significant increases in the richness of endo-rhizobacteria, namely Gammaproteobacteria (Enterobacteriaceae) and predominantly Alphaproteobacteria (Rhizobiaceae). This culminated in greater retrieval of the rhizobacteria taxa associated with the plant roots. We conclude that the plant teabag culture medium by itself, without any nutritional supplements, is sufficient and efficient for recovering and mirroring the complex and diverse communities of rhizobacteria. Our message to fellow microbial ecologists is: simply dehydrate your plant canopy, teabag it and soak it to prepare your culture media, with no need for any additional supplementary nutrients.

摘要

我们开发了装有脱水植物粉末的茶包,不添加任何补充剂,用于制备培养根际细菌所需的植物浸出液。与标准化学合成培养基相比,这些细菌在这种植物茶包培养基上能高效培养,原位回收率更高。结合各种基于植物的培养基和培养条件,我们能够解析测试的标准培养基无法解析的独特变性梯度凝胶电泳(DGGE)条带。基于16S rDNA指纹图谱的聚合酶链反应PCR-DGGE和测序,植物茶包培养基支持更高的多样性,并且根内细菌的丰富度显著增加,即γ-变形菌纲(肠杆菌科)和主要的α-变形菌纲(根瘤菌科)。这最终导致与植物根系相关的根际细菌类群的回收率更高。我们得出结论,植物茶包培养基本身,无需任何营养补充剂,就足以高效地恢复和反映根际细菌复杂多样的群落。我们想对微生物生态学界的同行说:只需将你的植物冠层脱水,装入茶包并浸泡以制备培养基,无需任何额外的补充营养。

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