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基于数字基因表达谱的脉红螺幼虫发育过程中差异表达基因的转录组分析

Transcriptomic Analysis of Differentially Expressed Genes During Larval Development of Rapana venosa by Digital Gene Expression Profiling.

作者信息

Song Hao, Yu Zheng-Lin, Sun Li-Na, Xue Dong-Xiu, Zhang Tao, Wang Hai-Yan

机构信息

Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, People's Republic of China University of Chinese Academy of Sciences, Beijing 100049, People's Republic of China.

Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, People's Republic of China.

出版信息

G3 (Bethesda). 2016 Jul 7;6(7):2181-93. doi: 10.1534/g3.116.029314.

Abstract

During the life cycle of shellfish, larval development, especially metamorphosis, has a vital influence on the dynamics, distribution, and recruitment of natural populations, as well as seed breeding. Rapana venosa, a carnivorous gastropod, is an important commercial shellfish in China, and is an ecological invader in the United States, Argentina, and France. However, information about the mechanism of its early development is still limited, because research in this area has long suffered from a lack of genomic resources. In this study, 15 digital gene expression (DGE) libraries from five developmental stages of R. venosa were constructed and sequenced on the IIIumina Hi-Sequation 2500 platform. Bioinformaticsanalysis identified numerous differentially and specifically expressed genes, which revealed that genes associated with growth, nervous system, digestive system, immune system, and apoptosis participate in important developmental processes. The functional analysis of differentially expressed genes was further implemented by gene ontology, and Kyoto encyclopedia of genes and genomes enrichment. DGE profiling provided a general picture of the transcriptomic activities during the early development of R. venosa, which may provide interesting hints for further study. Our data represent the first comparative transcriptomic information available for the early development of R. venosa, which is a prerequisite for a better understanding of the physiological traits controlling development.

摘要

在贝类的生命周期中,幼体发育,尤其是变态发育,对自然种群的动态、分布和补充以及苗种繁育有着至关重要的影响。红螺,一种肉食性腹足纲动物,是中国重要的商业贝类,同时也是美国、阿根廷和法国的生态入侵物种。然而,由于该领域长期缺乏基因组资源,其早期发育机制的相关信息仍然有限。在本研究中,构建了来自红螺五个发育阶段的15个数字基因表达(DGE)文库,并在Illumina Hi - Sequation 2500平台上进行测序。生物信息学分析鉴定出大量差异表达和特异性表达的基因,这些基因表明与生长、神经系统、消化系统、免疫系统和细胞凋亡相关的基因参与了重要的发育过程。通过基因本体论和京都基因与基因组百科全书富集分析进一步对差异表达基因进行功能分析。DGE分析描绘了红螺早期发育过程中转录组活动的总体情况,这可能为进一步研究提供有趣的线索。我们的数据代表了红螺早期发育可获得的首个比较转录组信息,这是更好地理解控制发育的生理特征的先决条件。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2db2/4938671/275a206501ec/2181f1.jpg

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