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新种沉积物滨藜栖菌,从潮滩分离得到。

Colwellia sediminilitoris sp. nov., isolated from a tidal flat.

作者信息

Park Sooyeon, Jung Yong-Taek, Yoon Jung-Hoon

机构信息

Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon, Republic of Korea.

University of Science and Technology (UST), 113 Gwahak-ro, Yuseong-gu, Daejeon, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2016 Sep;66(9):3258-3263. doi: 10.1099/ijsem.0.001183. Epub 2016 May 24.

Abstract

A Gram-stain-negative, aerobic, motile and rod-shaped or ovoid bacterial strain, designated YSM-23T, was isolated from a tidal flat on the South Sea in South Korea, and subjected to a polyphasic taxonomic study. Strain YSM-23T grew optimally at 30 °C, at pH 7.0-8.0 and in the presence of 1.0-2.0 % (w/v) NaCl. The phylogenetic trees based on 16S rRNA gene sequences showed that strain YSM-23T represented a member of the genus Colwellia. Strain YSM-23T exhibited 16S rRNA gene sequence similarity values of 98.0, 97.4 and 97.3 % to the type strains of Colwellia aestuarii, Colwellia polaris and Colwellia chukchiensis, respectively, and of 94.5-96.8 % to the type strains of the other species of the genus Colwellia. Strain YSM-23T contained Q-8 as the predominant ubiquinone and summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) as the major fatty acid. The major polar lipids detected in strain YSM-23T were phosphatidylglycerol and phosphatidylethanolamine. The DNA G+C content of strain YSM-23T was 43.8±0.08 mol% and its DNA-DNA relatedness values with the type strain of C. aestuarii, C. polaris and C. chukchiensis were 10±3.5-22±4.9 %. Differential phenotypic properties, together with its phylogenetic and genetic distinctiveness, revealed that strain YSM-23T is separated from species of the genus Colwelliawith validly published names. On the basis of the data presented, strain YSM-23T is considered to represent a novel species of the genus Colwellia, for which the name Colwellia sediminilitoris sp. nov. is proposed. The type strain is YSM-23T (=KCTC 52213T=NBRC 111994T).

摘要

从韩国南海的潮滩中分离出一株革兰氏染色阴性、需氧、具运动性的杆状或卵形细菌菌株,命名为YSM-23T,并对其进行了多相分类研究。菌株YSM-23T在30 °C、pH 7.0 - 8.0以及1.0 - 2.0 %(w/v)NaCl条件下生长最佳。基于16S rRNA基因序列构建的系统发育树表明,菌株YSM-23T属于科尔韦氏菌属。菌株YSM-23T与河口科尔韦氏菌、极地科尔韦氏菌和楚科奇海科尔韦氏菌模式菌株的16S rRNA基因序列相似性值分别为98.0%、97.4%和97.3%,与科尔韦氏菌属其他物种模式菌株的相似性值为94.5 - 96.8%。菌株YSM-23T以Q-8作为主要泛醌,以特征性总和3(C16 : 1ω7c和/或C16 : 1ω6c)作为主要脂肪酸。在菌株YSM-23T中检测到的主要极性脂为磷脂酰甘油和磷脂酰乙醇胺。菌株YSM-23T的DNA G+C含量为43.8±0.08 mol%,其与河口科尔韦氏菌、极地科尔韦氏菌和楚科奇海科尔韦氏菌模式菌株的DNA-DNA相关性值为10±3.5 - 22±4.9 %。不同的表型特征,以及其系统发育和遗传独特性,表明菌株YSM-23T与已有效发表名称的科尔韦氏菌属物种不同。根据所提供的数据,菌株YSM-23T被认为代表科尔韦氏菌属的一个新物种,为此提出新名称科尔韦氏菌潮滩沉积物种(Colwellia sediminilitoris sp. nov.)。模式菌株为YSM-23T(=KCTC 52213T=NBRC 111994T)。

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