Ge Yongyi, Wang Yuchen, Liu YongXiang, Tan Yumei, Ren Xiuxiu, Zhang Xinyu, Hyde Kevin D, Liu Yongfeng, Liu Zuoyi
College of Agriculture, Guizhou University, Guiyang, Guizhou, 550025, China.
Guizhou Key Laboratory of Agricultural Biotechnology, Guiyang, Guizhou, 550006, China.
BMC Genomics. 2016 Jun 7;17:428. doi: 10.1186/s12864-016-2637-y.
Aspergillus cristatus is the dominant fungus involved in the fermentation of Chinese Fuzhuan brick tea. Aspergillus cristatus is a homothallic fungus that undergoes a sexual stage without asexual conidiation when cultured in hypotonic medium. The asexual stage is induced by a high salt concentration, which completely inhibits sexual development. The taxon is therefore appropriate for investigating the mechanisms of asexual and sexual reproduction in fungi. In this study, de novo genome sequencing and analysis of transcriptomes during culture under high- and low-osmolarity conditions were performed. These analyses facilitated investigation of the evolution of mating-type genes, which determine the mode of sexual reproduction, in A. cristatus, the response of the high-osmolarity glycerol (HOG) pathway to osmotic stimulation, and the detection of mycotoxins and evaluation of the relationship with the location of the encoding genes.
The A. cristatus genome comprised 27.9 Mb and included 68 scaffolds, from which 10,136 protein-coding gene models were predicted. A phylogenetic analysis suggested a considerable phylogenetic distance between A. cristatus and A. nidulans. Comparison of the mating-type gene loci among Aspergillus species indicated that the mode in A. cristatus differs from those in other Aspergillus species. The components of the HOG pathway were conserved in the genome of A. cristatus. Differential gene expression analysis in A. cristatus using RNA-Seq demonstrated that the expression of most genes in the HOG pathway was unaffected by osmotic pressure. No gene clusters associated with the production of carcinogens were detected.
A model of the mating-type locus in A. cristatus is reported for the first time. Aspergillus cristatus has evolved various mechanisms to cope with high osmotic stress. As a fungus associated with Fuzhuan tea, it is considered to be safe under low- and high-osmolarity conditions.
冠突曲霉是参与中国茯砖茶发酵的主要真菌。冠突曲霉是一种同宗配合真菌,在低渗培养基中培养时会经历有性阶段而不产生无性分生孢子。高盐浓度可诱导无性阶段,这会完全抑制有性发育。因此,该分类单元适合用于研究真菌无性和有性繁殖的机制。在本研究中,对高渗和低渗条件下培养过程中的转录组进行了从头基因组测序和分析。这些分析有助于研究冠突曲霉中决定有性繁殖方式的交配型基因的进化、高渗甘油(HOG)途径对渗透刺激的反应,以及霉菌毒素的检测和与编码基因位置关系的评估。
冠突曲霉基因组由27.9 Mb组成,包含68个支架,从中预测出10136个蛋白质编码基因模型。系统发育分析表明冠突曲霉与构巢曲霉之间存在相当大的系统发育距离。曲霉属物种间交配型基因座的比较表明,冠突曲霉中的模式与其他曲霉属物种不同。HOG途径的组成成分在冠突曲霉基因组中是保守的。使用RNA-Seq对冠突曲霉进行差异基因表达分析表明,HOG途径中大多数基因的表达不受渗透压影响。未检测到与致癌物产生相关的基因簇。
首次报道了冠突曲霉交配型基因座的模型。冠突曲霉已经进化出多种机制来应对高渗胁迫。作为一种与茯茶相关的真菌,它在低渗和高渗条件下被认为是安全的。