a Faculty of Physics , M.V. Lomonosov Moscow State University , Moscow , Russia.
b A.M. Butlerov Institute of Chemistry , Kazan Federal University , Kazan , Russia.
Expert Opin Drug Discov. 2016 Aug;11(8):785-95. doi: 10.1080/17460441.2016.1201262. Epub 2016 Jul 4.
Neural networks are becoming a very popular method for solving machine learning and artificial intelligence problems. The variety of neural network types and their application to drug discovery requires expert knowledge to choose the most appropriate approach.
In this review, the authors discuss traditional and newly emerging neural network approaches to drug discovery. Their focus is on backpropagation neural networks and their variants, self-organizing maps and associated methods, and a relatively new technique, deep learning. The most important technical issues are discussed including overfitting and its prevention through regularization, ensemble and multitask modeling, model interpretation, and estimation of applicability domain. Different aspects of using neural networks in drug discovery are considered: building structure-activity models with respect to various targets; predicting drug selectivity, toxicity profiles, ADMET and physicochemical properties; characteristics of drug-delivery systems and virtual screening.
Neural networks continue to grow in importance for drug discovery. Recent developments in deep learning suggests further improvements may be gained in the analysis of large chemical data sets. It's anticipated that neural networks will be more widely used in drug discovery in the future, and applied in non-traditional areas such as drug delivery systems, biologically compatible materials, and regenerative medicine.
神经网络正成为解决机器学习和人工智能问题的一种非常流行的方法。神经网络的种类繁多,应用于药物发现,需要专家知识来选择最合适的方法。
在这篇综述中,作者讨论了传统和新兴的神经网络方法在药物发现中的应用。他们的重点是反向传播神经网络及其变体、自组织映射及其相关方法,以及相对较新的技术,即深度学习。讨论了最重要的技术问题,包括通过正则化防止过拟合、集成和多任务建模、模型解释以及适用性域估计。还考虑了神经网络在药物发现中的不同方面:针对各种靶点构建结构活性模型;预测药物选择性、毒性特征、ADMET 和物理化学性质;药物传递系统和虚拟筛选的特点。
神经网络在药物发现中的重要性继续增加。深度学习的最新发展表明,在分析大型化学数据集方面可能会取得进一步的改进。预计未来神经网络将更广泛地应用于药物发现,并应用于非传统领域,如药物传递系统、生物相容材料和再生医学。