Shabman Reed S, Shrivastava Susmita, Tsibane Tshidi, Attie Oliver, Jayaprakash Anitha, Mire Chad E, Dilley Kari E, Puri Vinita, Stockwell Timothy B, Geisbert Thomas W, Sachidanandam Ravi, Basler Christopher F
Virology Group, J. Craig Venter Institute, Rockville, Maryland, USA; Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Virology Group, J. Craig Venter Institute, Rockville, Maryland, USA.
mSphere. 2016 Feb 17;1(1). doi: 10.1128/mSphere.00070-15. eCollection 2016 Jan-Feb.
While employing deep sequencing and de novo assembly to characterize the mRNA transcript profile of a cell line derived from the microbat Myotis velifer incautus, we serendipitously identified mRNAs encoding proteins with a high level of identity to herpesviruses. A majority were closely related to proteins of equine herpesvirus 2 (EHV-2), a horse gammaherpesvirus. We demonstrated by electron microscopy the presence of herpesvirus-like particles in the microbat cells. Passage of supernatants from microbat cells to Vero cells resulted in syncytium formation, and expression of viral genes and amplification of viral DNA were demonstrated by quantitative PCR. Susceptibility of human cell lines to productive infection was also demonstrated. Next-generation sequencing and de novo assembly of the viral genome from supernatants from Vero cells yielded a single contig of approximately 130 kb with at least 77 open reading frames (ORFs), predicted microRNAs (miRNAs), and a gammaherpesvirus genomic organization. Phylogenic analysis of the envelope glycoprotein (gB) and DNA polymerase (POLD1) revealed similarity to multiple gammaherpesviruses, including those from as-yet-uncultured viruses of the Rhadinovirus genus that were obtained by deep sequencing of bat tissues. Moreover, the assembled genome revealed ORFs that share little or no homology to known ORFs in EHV-2 but are similar to accessory proteins of other gammaherpesviruses. Some also have striking homology to predicted Myotis bat proteins. Cumulatively, this study provides the first isolation and characterization of a replication-competent bat gammaherpesvirus. IMPORTANCE Bats are of significant interest as reservoirs for zoonotic viral pathogens; however, tools to dissect bat-virus interactions are limited in availability. This study serendipitously identified, in an established bat cell line, a fully replication-competent gammaherpesvirus; determined the complete genome sequence of the virus; and generated a viral transcript map. This virus can replicate in select human and nonhuman primate cell lines. However, analyses of viral sequences support a bat origin for this virus; we therefore refer to the virus as bat gammaherpesvirus 8 (BGHV8). The viral genome contains unique open reading frames that likely encode modulators of bat innate and adaptive immune signaling pathways and expresses viral miRNAs. The virus and its gene products should provide a unique tool to dissect both bat and gammaherpesvirus biology.
在利用深度测序和从头组装来表征源自墨西哥无尾蝠(Myotis velifer incautus)的细胞系的mRNA转录本谱时,我们意外地鉴定出了编码与疱疹病毒具有高度同源性的蛋白质的mRNA。其中大多数与马疱疹病毒2型(EHV - 2,一种马γ疱疹病毒)的蛋白质密切相关。我们通过电子显微镜证明了墨西哥无尾蝠细胞中存在疱疹病毒样颗粒。将墨西哥无尾蝠细胞的上清液接种到非洲绿猴肾细胞(Vero细胞)中导致了多核巨细胞形成,并且通过定量PCR证明了病毒基因的表达和病毒DNA的扩增。还证明了人类细胞系对 productive感染的易感性。对来自Vero细胞上清液的病毒基因组进行下一代测序和从头组装,得到了一个约130 kb的单一重叠群,其中至少有77个开放阅读框(ORF)、预测的微小RNA(miRNA)以及γ疱疹病毒基因组结构。对包膜糖蛋白(gB)和DNA聚合酶(POLD1)的系统发育分析揭示了与多种γ疱疹病毒的相似性,包括通过对蝙蝠组织进行深度测序获得的尚未培养的拉达诺病毒属病毒。此外,组装的基因组揭示了一些开放阅读框,它们与EHV - 2中已知的开放阅读框几乎没有或没有同源性,但与其他γ疱疹病毒的辅助蛋白相似。有些还与预测的墨西哥无尾蝠蛋白具有显著的同源性。总的来说,这项研究首次分离并表征了一种具有复制能力的蝙蝠γ疱疹病毒。重要性蝙蝠作为人畜共患病毒病原体的宿主备受关注;然而,剖析蝙蝠与病毒相互作用的工具有限。本研究意外地在一个已建立的蝙蝠细胞系中鉴定出一种具有完全复制能力γ疱疹病毒;确定了该病毒的完整基因组序列,并绘制了病毒转录图谱。这种病毒可以在特定的人类和非人类灵长类细胞系中复制。然而,对病毒序列的分析支持该病毒起源于蝙蝠;因此,我们将该病毒称为蝙蝠γ疱疹病毒8(BGHV8)。病毒基因组包含可能编码蝙蝠固有和适应性免疫信号通路调节因子的独特开放阅读框,并表达病毒miRNA。该病毒及其基因产物应为剖析蝙蝠和γ疱疹病毒生物学提供一个独特的工具。