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本文引用的文献

1
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
2
Clinical and laboratory diagnostic characteristics and cytotoxigenic potential of Hafnia alvei and Hafnia paralvei strains.海氏肠杆菌和副海氏肠杆菌临床和实验室诊断特征及细胞毒素生成潜能。
J Clin Microbiol. 2011 Sep;49(9):3122-6. doi: 10.1128/JCM.00866-11. Epub 2011 Jul 27.
3
Temperature influences the expression of fimbriae and flagella in Hafnia alvei strains: an immunofluorescence study.
Arch Microbiol. 2009 Mar;191(3):191-8. doi: 10.1007/s00203-008-0442-y. Epub 2008 Nov 15.
4
Invasion and intracellular survival of Hafnia alvei strains in human epithelial cells.海氏肠杆菌在人上皮细胞中的侵袭和胞内生存。
J Appl Microbiol. 2008 Nov;105(5):1614-22. doi: 10.1111/j.1365-2672.2008.03884.x. Epub 2008 Sep 13.
5
An unexpected isolate of Hafnia alvei with reduced susceptibility to cefoxitin.一株对头孢西丁敏感性降低的蜂房哈夫尼亚菌意外分离株。
J Infect. 2008 Aug;57(2):165-6. doi: 10.1016/j.jinf.2008.06.011. Epub 2008 Jul 23.
6
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
7
Antibiotic resistance and adherence properties of Hafnia alvei clinical isolates: a 19-month study in the hospital of Orléans, France.蜂房哈夫尼亚菌临床分离株的抗生素耐药性及黏附特性：法国奥尔良医院的一项为期19个月的研究
J Chemother. 2007 Dec;19(6):677-81. doi: 10.1179/joc.2007.19.6.677.
8
The genus Hafnia: from soup to nuts.哈夫尼亚菌属：从始至终
Clin Microbiol Rev. 2006 Jan;19(1):12-8. doi: 10.1128/CMR.19.1.12-28.2006.

人源分离株蜂房哈夫尼亚菌HUMV-5920的全基因组序列

Whole-Genome Sequence of Hafnia alvei HUMV-5920, a Human Isolate.

作者信息

Lázaro-Díez María, Redondo-Salvo Santiago, Arboleya-Agudo Aroa, Ocejo-Vinyals Javier Gonzalo, Chapartegui-González Itziar, Ocampo-Sosa Alain A, Acosta Felix, Martínez-Martínez Luis, Ramos-Vivas José

机构信息

Servicio de Microbiología, Hospital Universitario Marqués de Valdecilla, Santander, Cantabria, Spain Instituto de Investigación Sanitaria Valdecilla (IDIVAL), Santander, Cantabria, Spain Red Española de Investigación en Patología Infecciosa (REIPI), Instituto de Salud Carlos III, Madrid, Spain.

Instituto de Investigación en Ingeniería de Aragón (I3A), Universidad de Zaragoza, Zaragoza, Spain.

出版信息

Genome Announc. 2016 Jun 16;4(3):e00556-16. doi: 10.1128/genomeA.00556-16.

DOI:10.1128/genomeA.00556-16
PMID:27313299
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4911478/
Abstract

A clinical isolate of Hafnia alvei (strain HUMV-5920) was obtained from a urine sample from an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a chromosome with 4.5 Mb and a circular contig of 87 kb. About 4,146 protein-coding genes are predicted from this assembly.

摘要

从一名成年患者的尿液样本中获得了蜂房哈夫尼亚菌的临床分离株（菌株HUMV - 5920）。我们在此报告使用PacBio单分子实时（SMRT）测序对其进行的全基因组组装，结果得到一条4.5 Mb的染色体和一个87 kb的环状重叠群。从该组装中预测出约4146个蛋白质编码基因。