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Dramatic Number Variation of R Genes in Solanaceae Species Accounted for by a Few R Gene Subfamilies.茄科物种中R基因的显著数量变异由少数R基因亚家族造成。
PLoS One. 2016 Feb 5;11(2):e0148708. doi: 10.1371/journal.pone.0148708. eCollection 2016.
2
Large-Scale Analyses of Angiosperm Nucleotide-Binding Site-Leucine-Rich Repeat Genes Reveal Three Anciently Diverged Classes with Distinct Evolutionary Patterns.被子植物核苷酸结合位点富含亮氨酸重复序列基因的大规模分析揭示了具有不同进化模式的三个古老分化类群。
Plant Physiol. 2016 Apr;170(4):2095-109. doi: 10.1104/pp.15.01487. Epub 2016 Feb 2.
3
Uncovering the dynamic evolution of nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes in Brassicaceae.揭示芸薹科中核苷酸结合位点-富含亮氨酸重复（NBS-LRR）基因的动态进化。
J Integr Plant Biol. 2016 Feb;58(2):165-77. doi: 10.1111/jipb.12365. Epub 2015 Jul 24.
4
Tree of life reveals clock-like speciation and diversification.生命之树揭示了类似时钟的物种形成和多样化。
Mol Biol Evol. 2015 Apr;32(4):835-45. doi: 10.1093/molbev/msv037. Epub 2015 Mar 3.
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Plant ecological strategies shift across the Cretaceous-Paleogene boundary.植物生态策略在白垩纪-古近纪界线处发生转变。
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Long-term evolution of nucleotide-binding site-leucine-rich repeat genes: understanding gained from and beyond the legume family.核苷酸结合位点富含亮氨酸重复序列基因的长期进化：从豆科植物家族及其他研究中获得的认识
Plant Physiol. 2014 Sep;166(1):217-34. doi: 10.1104/pp.114.243626. Epub 2014 Jul 22.
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Loss/retention and evolution of NBS-encoding genes upon whole genome triplication of Brassica rapa.芸薹属（Brassica rapa）全基因组三倍体化过程中 NBS 编码基因的丢失/保留和进化。
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8
Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework.球腔菌目系统发育谱系：一个系统和进化框架。
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Fusarium pathogenomics.镰刀菌病原组学。
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Frequent loss of lineages and deficient duplications accounted for low copy number of disease resistance genes in Cucurbitaceae.频繁的谱系丢失和缺陷重复导致葫芦科抗病基因的拷贝数较低。
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追踪被子植物中NBS-LRR基因的祖先谱系及近期扩张情况。

Tracking ancestral lineages and recent expansions of NBS-LRR genes in angiosperms.

作者信息

Shao Zhu-Qing, Wang Bin, Chen Jian-Qun

机构信息

a State Key Laboratory of Pharmaceutical Biotechnology , School of Life Sciences, Nanjing University , Nanjing , China.

出版信息

Plant Signal Behav. 2016 Jul 2;11(7):e1197470. doi: 10.1080/15592324.2016.1197470.

DOI:10.1080/15592324.2016.1197470
PMID:27348446
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4991334/
Abstract

Nucleotide-Binding Site-Leucine-Rich Repeat (NBS-LRR) genes are the largest plant disease resistance (R) gene family, accounting for ∼80% of more than 140 cloned R genes. Recently, we systematically investigated NBS-LRR genes in 22 angiosperm genomes. By performing phylogenetic analysis of these genes in major angiosperm clades separately and as a whole, we gained strong evidence supporting that angiosperm NBS-LRR genes are derived from 3 anciently separated NBS-LRR classes: RPW8-NBS-LRR (RNL), TIR-NBS-LRR (TNL) and CC-NBS-LRR (CNL). A total of 23 ancestral NBS-LRR lineages gave rise to the current NBS-LRR diversity of angiosperm through dynamic expansions. Comparative analysis of RNL, TNL, and CNL classes revealed that while RNL genes evolved conservatively to maintain its role in defense signal transduction, the latter 2 classes underwent convergent recent expansions in various plant genomes. The revealed evolutionary pattern of angiosperm NBS-LRR genes reflects a long history of competition between plant and pathogen.

摘要

核苷酸结合位点富含亮氨酸重复序列（NBS-LRR）基因是植物中最大的抗病（R）基因家族，在140多个已克隆的R基因中约占80%。最近，我们系统地研究了22个被子植物基因组中的NBS-LRR基因。通过分别对主要被子植物分支中的这些基因进行系统发育分析以及整体分析，我们获得了有力证据，支持被子植物NBS-LRR基因源自3个古老分化的NBS-LRR类别：RPW8-NBS-LRR（RNL）、TIR-NBS-LRR（TNL）和CC-NBS-LRR（CNL）。总共23个祖先NBS-LRR谱系通过动态扩展产生了当前被子植物的NBS-LRR多样性。对RNL、TNL和CNL类别的比较分析表明，虽然RNL基因进化保守以维持其在防御信号转导中的作用，但后两类在各种植物基因组中经历了趋同的近期扩展。所揭示的被子植物NBS-LRR基因的进化模式反映了植物与病原体之间长期的竞争历史。