Suppr超能文献

癌症与发育障碍之间的深层基因联系。

Deep Genetic Connection Between Cancer and Developmental Disorders.

作者信息

Qi Hongjian, Dong Chengliang, Chung Wendy K, Wang Kai, Shen Yufeng

机构信息

Department of Applied Physics and Applied Mathematics, Columbia University, New York, New York.

Department of Systems Biology, Columbia University Medical Center, New York, New York.

出版信息

Hum Mutat. 2016 Oct;37(10):1042-50. doi: 10.1002/humu.23040. Epub 2016 Aug 23.

Abstract

Cancer and developmental disorders (DDs) share dysregulated cellular processes such as proliferation and differentiation. There are well-known genes implicated in both in cancer and DDs. In this study, we aim to quantify this genetic connection using publicly available data. We found that among DD patients, germline damaging de novo variants are more enriched in cancer driver genes than non-drivers. We estimate that cancer driver genes comprise about a third of DD risk genes. Additionally, de novo likely-gene-disrupting variants are more enriched in tumor suppressors, and about 40% of implicated de novo damaging missense variants are located in cancer somatic mutation hotspots, indicating that many genes have a similar mode of action in cancer and DDs. Our results suggest that we can view tumors as natural laboratories for assessing the deleterious effects of mutations that are applicable to germline variants and identification of causal genes and variants in DDs.

摘要

癌症和发育障碍(DDs)存在细胞增殖和分化等细胞过程失调的情况。有一些知名基因与癌症和发育障碍都有关联。在本研究中,我们旨在利用公开可用的数据量化这种遗传联系。我们发现,在发育障碍患者中,种系有害新生变异在癌症驱动基因中比在非驱动基因中更为富集。我们估计癌症驱动基因约占发育障碍风险基因的三分之一。此外,新生的可能破坏基因的变异在肿瘤抑制基因中更为富集,并且约40%的相关新生有害错义变异位于癌症体细胞突变热点区域,这表明许多基因在癌症和发育障碍中具有相似的作用模式。我们的结果表明,我们可以将肿瘤视为天然实验室,用于评估适用于种系变异的突变的有害影响,并识别发育障碍中的致病基因和变异。

相似文献

1
9
Germline fitness-based scoring of cancer mutations.基于种系适合度的癌症突变评分。
Genetics. 2011 Jun;188(2):383-93. doi: 10.1534/genetics.111.127480. Epub 2011 Mar 24.

引用本文的文献

1
Tumors and their microenvironments: Learning from pediatric brain pathologies.肿瘤及其微环境:从儿童脑部病理学中学习。
Biochim Biophys Acta Rev Cancer. 2025 Jul;1880(3):189328. doi: 10.1016/j.bbcan.2025.189328. Epub 2025 Apr 18.
8
The Imageable Genome.可成像基因组
Nat Commun. 2023 Nov 13;14(1):7329. doi: 10.1038/s41467-023-43123-3.

本文引用的文献

6
Interpreting de novo Variation in Human Disease Using denovolyzeR.使用denovolyzeR解释人类疾病中的新生变异。
Curr Protoc Hum Genet. 2015 Oct 6;87:7.25.1-7.25.15. doi: 10.1002/0471142905.hg0725s87.
7
Comprehensive assessment of cancer missense mutation clustering in protein structures.蛋白质结构中癌症错义突变聚类的综合评估。
Proc Natl Acad Sci U S A. 2015 Oct 6;112(40):E5486-95. doi: 10.1073/pnas.1516373112. Epub 2015 Sep 21.
9
Mutations in ARID2 are associated with intellectual disabilities.ARID2基因的突变与智力残疾有关。
Neurogenetics. 2015 Oct;16(4):307-14. doi: 10.1007/s10048-015-0454-0. Epub 2015 Aug 4.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验