原核生物免疫机制的进化生态学
Evolutionary Ecology of Prokaryotic Immune Mechanisms.
作者信息
van Houte Stineke, Buckling Angus, Westra Edze R
机构信息
ESI and CEC, Department of Biosciences, University of Exeter, Exeter, United Kingdom.
ESI and CEC, Department of Biosciences, University of Exeter, Exeter, United Kingdom
出版信息
Microbiol Mol Biol Rev. 2016 Jul 13;80(3):745-63. doi: 10.1128/MMBR.00011-16. Print 2016 Sep.
Abstract
Bacteria have a range of distinct immune strategies that provide protection against bacteriophage (phage) infections. While much has been learned about the mechanism of action of these defense strategies, it is less clear why such diversity in defense strategies has evolved. In this review, we discuss the short- and long-term costs and benefits of the different resistance strategies and, hence, the ecological conditions that are likely to favor the different strategies alone and in combination. Finally, we discuss some of the broader consequences, beyond resistance to phage and other genetic elements, resulting from the operation of different immune strategies.
摘要
细菌拥有一系列独特的免疫策略，可提供针对噬菌体感染的保护。虽然我们已经对这些防御策略的作用机制有了很多了解，但防御策略为何会进化出如此多样性却不太清楚。在这篇综述中，我们讨论了不同抗性策略的短期和长期成本与收益，以及因此可能单独或组合有利于不同策略的生态条件。最后，我们讨论了不同免疫策略的运作除了对噬菌体和其他遗传元件的抗性之外所产生的一些更广泛的后果。
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本文引用的文献
1
The Evolution of Costly Resistance in Host-Parasite Systems.
Am Nat. 1999 Apr;153(4):359-370. doi: 10.1086/303181.
2
PHAGE-MEDIATED SELECTION AND THE EVOLUTION AND MAINTENANCE OF RESTRICTION-MODIFICATION.
Evolution. 1993 Apr;47(2):556-575. doi: 10.1111/j.1558-5646.1993.tb02113.x.
3
EXPERIMENTAL STUDIES OF PLEIOTROPY AND EPISTASIS IN ESCHERICHIA COLI. I. VARIATION IN COMPETITIVE FITNESS AMONG MUTANTS RESISTANT TO VIRUS T4.
Evolution. 1988 May;42(3):425-432. doi: 10.1111/j.1558-5646.1988.tb04149.x.
4
Prophages mediate defense against phage infection through diverse mechanisms.
ISME J. 2016 Dec;10(12):2854-2866. doi: 10.1038/ismej.2016.79. Epub 2016 Jun 3.
5
The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA.
Nature. 2016 Apr 28;532(7600):517-21. doi: 10.1038/nature17945. Epub 2016 Apr 20.
6
The diversity-generating benefits of a prokaryotic adaptive immune system.
Nature. 2016 Apr 21;532(7599):385-8. doi: 10.1038/nature17436. Epub 2016 Apr 13.
7
Lytic to temperate switching of viral communities.
Nature. 2016 Mar 24;531(7595):466-70. doi: 10.1038/nature17193. Epub 2016 Mar 16.
8
Degradation of Phage Transcripts by CRISPR-Associated RNases Enables Type III CRISPR-Cas Immunity.
Cell. 2016 Feb 11;164(4):710-21. doi: 10.1016/j.cell.2015.12.053. Epub 2016 Feb 4.
9
Bacterial Autoimmunity Due to a Restriction-Modification System.
Curr Biol. 2016 Feb 8;26(3):404-9. doi: 10.1016/j.cub.2015.12.041. Epub 2016 Jan 21.
10
Lifespan of restriction-modification systems critically affects avoidance of their recognition sites in host genomes.
BMC Genomics. 2015 Dec 21;16:1084. doi: 10.1186/s12864-015-2288-4.
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