Serebryany Eugene, Woodard Jaie C, Adkar Bharat V, Shabab Mohammed, King Jonathan A, Shakhnovich Eugene I
From the Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139 and.
the Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138.
J Biol Chem. 2016 Sep 2;291(36):19172-83. doi: 10.1074/jbc.M116.735977. Epub 2016 Jul 14.
Considerable mechanistic insight has been gained into amyloid aggregation; however, a large number of non-amyloid protein aggregates are considered "amorphous," and in most cases, little is known about their mechanisms. Amorphous aggregation of γ-crystallins in the eye lens causes cataract, a widespread disease of aging. We combined simulations and experiments to study the mechanism of aggregation of two γD-crystallin mutants, W42R and W42Q: the former a congenital cataract mutation, and the latter a mimic of age-related oxidative damage. We found that formation of an internal disulfide was necessary and sufficient for aggregation under physiological conditions. Two-chain all-atom simulations predicted that one non-native disulfide in particular, between Cys(32) and Cys(41), was likely to stabilize an unfolding intermediate prone to intermolecular interactions. Mass spectrometry and mutagenesis experiments confirmed the presence of this bond in the aggregates and its necessity for oxidative aggregation under physiological conditions in vitro Mining the simulation data linked formation of this disulfide to extrusion of the N-terminal β-hairpin and rearrangement of the native β-sheet topology. Specific binding between the extruded hairpin and a distal β-sheet, in an intermolecular chain reaction similar to domain swapping, is the most probable mechanism of aggregate propagation.
关于淀粉样蛋白聚集,我们已经获得了相当多的机制性见解;然而,大量的非淀粉样蛋白聚集体被认为是“无定形的”,并且在大多数情况下,我们对其机制知之甚少。眼晶状体中γ-晶状体蛋白的无定形聚集会导致白内障,这是一种普遍的衰老疾病。我们结合模拟和实验来研究两种γD-晶状体蛋白突变体W42R和W42Q的聚集机制:前者是一种先天性白内障突变,后者模拟与年龄相关的氧化损伤。我们发现,在生理条件下,内部二硫键的形成对于聚集是必要且充分的。双链全原子模拟预测,特别是Cys(32)和Cys(41)之间的一个非天然二硫键,可能会稳定一个易于分子间相互作用的未折叠中间体。质谱和诱变实验证实了该键在聚集体中的存在及其在体外生理条件下氧化聚集的必要性。挖掘模拟数据将该二硫键的形成与N端β-发夹的挤出和天然β-折叠拓扑结构的重排联系起来。在类似于结构域交换的分子间链反应中,挤出的发夹与远端β-折叠之间的特异性结合是聚集体传播最可能的机制。