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小肽在双层界面处疏水结合的性质:对跨膜螺旋插入的影响。

The nature of the hydrophobic binding of small peptides at the bilayer interface: implications for the insertion of transbilayer helices.

作者信息

Jacobs R E, White S H

机构信息

Department of Physiology and Biophysics, University of California, Irvine 92717.

出版信息

Biochemistry. 1989 Apr 18;28(8):3421-37. doi: 10.1021/bi00434a042.

Abstract

One method of obtaining useful information about the physical chemistry of peptide/bilayer interactions is to relate thermodynamic parameters of the interactions to structural parameters obtained by diffraction methods. We report here the results of the application of this approach to interactions of hydrophobic tripeptides of the form Ala-X-Ala-O-tert-butyl with lipid bilayers. The thermodynamic constants (delta Gt, delta Ht, and delta St) for the transfer of the tripeptides from water into DMPC vesicles were determined for X = Leu, Phe, and Trp and found to be consistent with those expected for hydrophobic interactions above the phase transition of DMPC. Combining these results with the earlier ones of Jacobs and White [(1986) Biochemistry 25, 2605-2612], the favorable free energies of transfer with different amino acids in the -X- position increase in the order Gly less than Ala less than Leu less than Phe less than Trp in agreement with the Nozaki and Tanford [(1971) J. Biol. Chem. 246, 2211-2217] hydrophobicity scale. Determination of the location of Ala-[2H5]Trp-Ala-O-tert-butyl in oriented DOPC bilayers by neutron diffraction shows that the most hydrophobic peptide of the series is confined to the bilayer headgroup/water region. Refinement of the diffraction measurements shows that only 13% of the tryptophan is associated with the hydrocarbon core. The distribution of the water tends to mirror that of the peptide. Unlike peptide-free bilayers, 5% of the water penetrates the hydrocarbon, which is about 100-fold greater than expected. A quantitative thermodynamic analysis of the interfacial binding of the peptides suggests that (1) the hydrophobic interactions are 60-70% complete upon binding at the bilayer interface, (2) the interface is likely to play an important role in helix formation and insertion, (3) the hydrogen bond status of amino acid side chains is crucial to insertion, and (4) an a priori lack of knowledge of the status of such bonds could limit the precision of hydrophobicity plots. We introduce an interfacial hydrophobicity scale, IFH(h), with a variable hydrogen bond parameter (h) that permits one to consider explicitly hydrogen bonding in transbilayer helix searches.

摘要

获取有关肽与双层相互作用物理化学有用信息的一种方法是将相互作用的热力学参数与通过衍射方法获得的结构参数相关联。我们在此报告将此方法应用于 Ala-X-Ala-O-叔丁基形式的疏水三肽与脂质双层相互作用的结果。对于 X = Leu、Phe 和 Trp,测定了三肽从水转移到 DMPC 囊泡中的热力学常数(ΔGt、ΔHt 和 ΔSt),发现它们与 DMPC 相变以上疏水相互作用预期的结果一致。将这些结果与 Jacobs 和 White 早期的结果 [(1986 年)《生物化学》25 卷,2605 - 2612 页] 相结合,-X- 位置带有不同氨基酸时,转移的有利自由能按 Gly 小于 Ala 小于 Leu 小于 Phe 小于 Trp 的顺序增加,这与野崎和坦福德 [(1971 年)《生物化学杂志》246 卷,2211 - 2217 页] 的疏水性标度一致。通过中子衍射确定 Ala-[2H5]Trp-Ala-O-叔丁基在定向 DOPC 双层中的位置表明,该系列中最疏水的肽局限于双层头基/水区域。对衍射测量结果的细化表明,只有 13% 的色氨酸与烃核相关。水的分布倾向于反映肽的分布。与不含肽的双层不同,5% 的水渗透到烃中,这比预期大 100 倍左右。对肽的界面结合进行的定量热力学分析表明:(1)在双层界面结合时,疏水相互作用完成了 60 - 70%;(2)界面可能在螺旋形成和插入中起重要作用;(3)氨基酸侧链的氢键状态对插入至关重要;(4)事先不了解此类键的状态可能会限制疏水性图谱的精度。我们引入了一种界面疏水性标度 IFH(h),其具有可变的氢键参数 (h),这使得人们在跨双层螺旋搜索中能够明确考虑氢键作用。

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