Liu Henry C, Jamshidi Neema, Chen Yuchen, Eraly Satish A, Cho Sai Yee, Bhatnagar Vibha, Wu Wei, Bush Kevin T, Abagyan Ruben, Palsson Bernhard O, Nigam Sanjay K
From the Departments of Bioengineering.
Bioinformatics and Systems Biology Graduate Program.
J Biol Chem. 2016 Sep 9;291(37):19474-86. doi: 10.1074/jbc.M116.745216. Epub 2016 Jul 20.
There has been a recent interest in the broader physiological importance of multispecific "drug" transporters of the SLC and ABC transporter families. Here, a novel multi-tiered systems biology approach was used to predict metabolites and signaling molecules potentially affected by the in vivo deletion of organic anion transporter 1 (Oat1, Slc22a6, originally NKT), a major kidney-expressed drug transporter. Validation of some predictions in wet-lab assays, together with re-evaluation of existing transport and knock-out metabolomics data, generated an experimentally validated, confidence ranked set of OAT1-interacting endogenous compounds enabling construction of an "OAT1-centered metabolic interaction network." Pathway and enrichment analysis indicated an important role for OAT1 in metabolism involving: the TCA cycle, tryptophan and other amino acids, fatty acids, prostaglandins, cyclic nucleotides, odorants, polyamines, and vitamins. The partly validated reconstructed network is also consistent with a major role for OAT1 in modulating metabolic and signaling pathways involving uric acid, gut microbiome products, and so-called uremic toxins accumulating in chronic kidney disease. Together, the findings are compatible with the hypothesized role of drug transporters in remote inter-organ and inter-organismal communication: The Remote Sensing and Signaling Hypothesis (Nigam, S. K. (2015) Nat. Rev. Drug Disc. 14, 29). The fact that OAT1 can affect many systemic biological pathways suggests that drug-metabolite interactions need to be considered beyond simple competition for the drug transporter itself and may explain aspects of drug-induced metabolic syndrome. Our approach should provide novel mechanistic insights into the role of OAT1 and other drug transporters implicated in metabolic diseases like gout, diabetes, and chronic kidney disease.
最近,人们对SLC和ABC转运蛋白家族的多特异性“药物”转运体在更广泛的生理重要性产生了兴趣。在此,我们采用了一种新颖的多层次系统生物学方法来预测可能受有机阴离子转运体1(Oat1,Slc22a6,最初为NKT)体内缺失影响的代谢物和信号分子,Oat1是一种主要在肾脏表达的药物转运体。通过湿实验室分析对一些预测进行验证,并重新评估现有的转运和基因敲除代谢组学数据,生成了一组经过实验验证、按置信度排序的与OAT1相互作用的内源性化合物,从而构建了一个“以OAT1为中心的代谢相互作用网络”。通路和富集分析表明,OAT1在代谢中具有重要作用,涉及:三羧酸循环、色氨酸和其他氨基酸、脂肪酸、前列腺素、环核苷酸、气味剂、多胺和维生素。部分验证的重建网络也与OAT1在调节涉及尿酸、肠道微生物群产物以及慢性肾病中积累的所谓尿毒症毒素的代谢和信号通路中的主要作用一致。总之,这些发现与药物转运体在远程器官间和生物体间通讯中的假设作用相符:遥感和信号假说(Nigam,S.K.(2015年)《自然评论:药物发现》14,29)。OAT1能够影响许多全身生物学通路这一事实表明,药物 - 代谢物相互作用需要超越对药物转运体本身的简单竞争来考虑,这可能解释了药物诱导的代谢综合征的某些方面。我们的方法应该为OAT1和其他与痛风、糖尿病和慢性肾病等代谢疾病相关的药物转运体的作用提供新的机制见解。