Whisenant Thomas C, Nigam Sanjay K
Center for Computational Biology and Bioinformatics, University of California, San Diego, CA 92093-0693, USA.
Department of Pediatrics, University of California, San Diego, CA 92093-0693, USA.
Cancers (Basel). 2022 Sep 29;14(19):4772. doi: 10.3390/cancers14194772.
(1) Background: Many transporters of the SLC22 family (e.g., OAT1, OAT3, OCT2, URAT1, and OCTN2) are highly expressed in the kidney. They transport drugs, metabolites, signaling molecules, antioxidants, nutrients, and gut microbiome products. According to the Remote Sensing and Signaling Theory, SLC22 transporters play a critical role in small molecule communication between organelles, cells and organs as well as between the body and the gut microbiome. This raises the question about the potential role of SLC22 transporters in cancer biology and treatment. (2) Results: In two renal cell carcinoma RNA-seq datasets found in TCGA, KIRC and KIRP, there were multiple differentially expressed (DE) SLC22 transporter genes compared to normal kidney. These included SLC22A6, SLC22A7, SLC22A8, SLC22A12, and SLC22A13. The patients with disease had an association between overall survival and expression for most of these DE genes. In KIRC, the stratification of patient data by pathological tumor characteristics revealed the importance of SLC22A2, SLC22A6, and SLC22A12 in disease progression. Interaction networks combining the SLC22 with ADME genes supported the centrality of SLC22 transporters and other transporters (ABCG2, SLC47A1) in disease progression. (3) Implications: The fact that many of these genes are uric acid transporters is interesting because altered uric acid levels have been associated with kidney cancer. Moreover, these genes play key roles in processing metabolites and chemotherapeutic compounds, thus making them potential therapeutic targets. Finally, our analyses raise the possibility that current approaches may undertreat certain kidney cancer patients with low SLC22 expression and only localized disease while possibly overtreating more advanced disease in patients with higher SLC22 expression. Clinical studies are needed to investigate these possibilities.
(1)背景:溶质载体家族22(SLC22)的许多转运蛋白(如OAT1、OAT3、OCT2、URAT1和OCTN2)在肾脏中高度表达。它们负责转运药物、代谢物、信号分子、抗氧化剂、营养物质和肠道微生物群产物。根据遥感与信号理论,SLC22转运蛋白在细胞器、细胞和器官之间以及身体与肠道微生物群之间的小分子通讯中起关键作用。这就引出了关于SLC22转运蛋白在癌症生物学和治疗中的潜在作用的问题。(2)结果:在TCGA中发现的两个肾细胞癌RNA测序数据集KIRC和KIRP中,与正常肾脏相比,有多个差异表达的(DE)SLC22转运蛋白基因。这些基因包括SLC22A6、SLC22A7、SLC22A8、SLC22A12和SLC22A13。疾病患者的总体生存率与这些DE基因中的大多数的表达之间存在关联。在KIRC中,按病理肿瘤特征对患者数据进行分层揭示了SLC22A2、SLC22A6和SLC22A12在疾病进展中的重要性。将SLC22与药物代谢和药物处置(ADME)基因结合的相互作用网络支持了SLC22转运蛋白和其他转运蛋白(ABCG2、SLC47A1)在疾病进展中的核心地位。(3)启示:这些基因中有许多是尿酸转运蛋白,这一事实很有趣,因为尿酸水平的改变与肾癌有关。此外,这些基因在处理代谢物和化疗化合物中起关键作用,因此使其成为潜在的治疗靶点。最后,我们的分析提出了一种可能性,即目前的治疗方法可能会对某些SLC22表达低且仅为局限性疾病的肾癌患者治疗不足,而对SLC22表达较高的更晚期疾病患者可能治疗过度。需要进行临床研究来调查这些可能性。