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溶液中分子染料光学性质的多模型方法

Multimodel Approach to the Optical Properties of Molecular Dyes in Solution.

作者信息

Timrov Iurii, Micciarelli Marco, Rosa Marta, Calzolari Arrigo, Baroni Stefano

机构信息

SISSA - Scuola Internazionale Superiore di Studi Avanzati, Via Bonomea 265, 34136 Trieste, Italy.

CNR-NANO, Istituto Nanoscienze, Centro S3, Via Campi 213A, 41125 Modena, Italy.

出版信息

J Chem Theory Comput. 2016 Sep 13;12(9):4423-9. doi: 10.1021/acs.jctc.6b00417. Epub 2016 Aug 19.

Abstract

We introduce a multimodel approach to the simulation of the optical properties of molecular dyes in solution, whereby the effects of thermal fluctuations and of dielectric screening on the absorption spectra are accounted for by explicit and implicit solvation models, respectively. Thermal effects are treated by averaging the spectra of molecular configurations generated by an ab initio molecular-dynamics simulation where solvent molecules are treated explicitly. Dielectric effects are then dealt with implicitly by computing the spectra upon removal of the solvent molecules and their replacement with an effective medium, in the spirit of a continuum solvation model. Our multimodel approach is validated by comparing its predictions with those of a fully explicit-solvation simulation for cyanidin-3-glucoside (cyanin) chromophore in water. While multimodel and fully explicit-solvent spectra may differ considerably for individual configurations along the trajectory, their time averages are remarkably similar, thus providing a solid benchmark of the former and allowing us to save considerably on the computer resources needed to predict accurate absorption spectra. The power of the proposed methodology is finally demonstrated by the excellent agreement between its predictions and the absorption spectra of cyanin measured at strong and intermediate acidity conditions.

摘要

我们介绍了一种用于模拟溶液中分子染料光学性质的多模型方法,其中热涨落和介电屏蔽对吸收光谱的影响分别由显式和隐式溶剂化模型来考虑。热效应通过对由从头算分子动力学模拟生成的分子构型光谱进行平均来处理,在该模拟中溶剂分子被显式处理。然后,按照连续介质溶剂化模型的思路,通过去除溶剂分子并用有效介质替代它们来计算光谱,从而隐式地处理介电效应。通过将我们的多模型方法的预测结果与水中花青素 - 3 - 葡萄糖苷(花青素)发色团的全显式溶剂化模拟结果进行比较,验证了我们的多模型方法。虽然沿着轨迹的单个构型的多模型光谱和全显式溶剂光谱可能有很大差异,但它们的时间平均值非常相似,从而为前者提供了可靠的基准,并使我们能够在预测准确吸收光谱所需的计算机资源上大幅节省。最后,通过该方法的预测结果与在强酸性和中等酸性条件下测量的花青素吸收光谱之间的出色一致性,证明了所提出方法的强大之处。

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