• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用于计算水合电子吸收光谱的二合一相空间采样

2-in-1 Phase Space Sampling for Calculating the Absorption Spectrum of the Hydrated Electron.

作者信息

Turi László, Baranyi Bence, Madarász Ádám

机构信息

Institute of Chemistry, ELTE, Eötvös Loránd University, Pázmány Péter sétány 1/A, Budapest H-1117, Hungary.

Research Centre for Natural Sciences, Magyar Tudósok Körútja 2, H-1117 Budapest, Hungary.

出版信息

J Chem Theory Comput. 2024 May 28;20(10):4265-4277. doi: 10.1021/acs.jctc.4c00106. Epub 2024 May 10.

DOI:10.1021/acs.jctc.4c00106
PMID:38727675
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11137824/
Abstract

The investigation of vibrational effects on absorption spectrum calculations often employs Wigner sampling or thermal sampling. While Wigner sampling incorporates zero-point energy, it may not be suitable for flexible systems. Thermal sampling is applicable to anharmonic systems yet treats nuclei classically. The application of generalized smoothed trajectory analysis (GSTA) as a postprocessing method allows for the incorporation of nuclear quantum effects (NQEs), combining the advantages of both sampling methods. We demonstrate this approach in computing the absorption spectrum of a hydrated electron. Theoretical exploration of the hydrated electron and its embryonic forms, such as water cluster anions, poses a significant challenge due to the diffusivity of the excess electron and the continuous motion of water molecules. In many previous studies, the wave nature of atomic nuclei is often neglected, despite the substantial impact of NQEs on thermodynamic and spectroscopic properties, particularly for hydrogen atoms. In our studies, we examine these NQEs for the excess electrons in various water systems. We obtained structures from mixed classical-quantum simulations for water cluster anions and the hydrated electron by incorporating the quantum effects of atomic nuclei with the filtration of the classical trajectories. Absorption spectra were determined at different theoretical levels. Our results indicate significant NQEs, red shift, and broadening of the spectra for hydrated electron systems. This study demonstrates the applicability of GSTA to complex systems, providing insights into NQEs on energetic and structural properties.

摘要

对吸收光谱计算中振动效应的研究通常采用维格纳采样或热采样。虽然维格纳采样纳入了零点能量,但它可能不适用于柔性系统。热采样适用于非谐系统,但将原子核视为经典粒子。应用广义平滑轨迹分析(GSTA)作为一种后处理方法,可以纳入核量子效应(NQE),结合了两种采样方法的优点。我们在计算水合电子的吸收光谱时展示了这种方法。由于多余电子的扩散性和水分子的持续运动,对水合电子及其胚胎形式(如水簇阴离子)进行理论探索构成了重大挑战。在许多先前的研究中,尽管核量子效应(NQE)对热力学和光谱性质有重大影响,特别是对氢原子,但原子核的波动性质常常被忽视。在我们的研究中,我们研究了各种水系统中多余电子的这些核量子效应。我们通过将原子核的量子效应与经典轨迹的过滤相结合,从水簇阴离子和水合电子的混合经典 - 量子模拟中获得了结构。在不同的理论水平上确定了吸收光谱。我们的结果表明水合电子系统存在显著的核量子效应、光谱红移和展宽。这项研究证明了GSTA对复杂系统的适用性,为核量子效应在能量和结构性质方面提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/e32685204f2b/ct4c00106_0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/a7c6f646002e/ct4c00106_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/ca0a9ead2ec5/ct4c00106_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/e1ef6fdabf01/ct4c00106_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/b805c8556f7b/ct4c00106_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/b2c46c75b861/ct4c00106_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/7f6962b6f521/ct4c00106_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/618f9f860ac1/ct4c00106_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/64c5e35a0b74/ct4c00106_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/e32685204f2b/ct4c00106_0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/a7c6f646002e/ct4c00106_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/ca0a9ead2ec5/ct4c00106_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/e1ef6fdabf01/ct4c00106_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/b805c8556f7b/ct4c00106_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/b2c46c75b861/ct4c00106_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/7f6962b6f521/ct4c00106_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/618f9f860ac1/ct4c00106_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/64c5e35a0b74/ct4c00106_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d3f/11137824/e32685204f2b/ct4c00106_0009.jpg

相似文献

1
2-in-1 Phase Space Sampling for Calculating the Absorption Spectrum of the Hydrated Electron.用于计算水合电子吸收光谱的二合一相空间采样
J Chem Theory Comput. 2024 May 28;20(10):4265-4277. doi: 10.1021/acs.jctc.4c00106. Epub 2024 May 10.
2
The structure of the hydrated electron. Part 2. A mixed quantum/classical molecular dynamics embedded cluster density functional theory: single-excitation configuration interaction study.水合电子的结构。第2部分。一种混合量子/经典分子动力学嵌入簇密度泛函理论:单激发组态相互作用研究。
J Phys Chem A. 2007 Jun 21;111(24):5232-43. doi: 10.1021/jp0682816. Epub 2007 May 27.
3
Understanding the Temperature Dependence and Finite Size Effects in Ab Initio MD Simulations of the Hydrated Electron.从头算分子动力学模拟水合电子中温度依赖性和有限尺寸效应的理解。
J Chem Theory Comput. 2022 Aug 9;18(8):4973-4982. doi: 10.1021/acs.jctc.2c00335. Epub 2022 Jul 14.
4
Evaluating Simple Models of the Hydrated Electron: The Role of Dynamical Fluctuations.评估水合电子的简单模型:动力学涨落的作用。
J Phys Chem B. 2020 Oct 29;124(43):9592-9603. doi: 10.1021/acs.jpcb.0c06356. Epub 2020 Oct 20.
5
Structure, dynamics, and reactivity of hydrated electrons by ab initio molecular dynamics.通过从头算分子动力学研究水合电子的结构、动力学和反应性。
Acc Chem Res. 2012 Jan 17;45(1):23-32. doi: 10.1021/ar200062m. Epub 2011 Sep 7.
6
Impact of Nuclear Quantum Effects on the Structural Properties of Protonated Water Clusters.核量子效应对质子化水团簇结构性质的影响。
J Phys Chem A. 2024 Jul 25;128(29):5954-5962. doi: 10.1021/acs.jpca.4c03340. Epub 2024 Jul 15.
7
To be or not to be in a cavity: the hydrated electron dilemma.存在还是不存在于空腔中:水化电子的困境。
J Phys Chem B. 2013 Nov 21;117(46):14173-82. doi: 10.1021/jp407912k. Epub 2013 Oct 25.
8
On the applicability of one- and many-electron quantum chemistry models for hydrated electron clusters.关于单电子和多电子量子化学模型在水合电子簇中的适用性
J Chem Phys. 2016 Apr 21;144(15):154311. doi: 10.1063/1.4945780.
9
Characterization of excess electrons in water-cluster anions by quantum simulations.通过量子模拟对水簇阴离子中过剩电子的表征
Science. 2005 Aug 5;309(5736):914-7. doi: 10.1126/science.1115808.
10
Resonance Raman and temperature-dependent electronic absorption spectra of cavity and noncavity models of the hydrated electron.水合电子的腔模型和非腔模型的共振拉曼和温度相关电子吸收光谱。
Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):2712-7. doi: 10.1073/pnas.1219438110. Epub 2013 Feb 4.

本文引用的文献

1
Empirically Optimized One-Electron Pseudopotential for the Hydrated Electron: A Proof-of-Concept Study.水合电子的经验优化单电子赝势:概念验证研究。
J Phys Chem B. 2023 Aug 24;127(33):7361-7371. doi: 10.1021/acs.jpcb.3c03540. Epub 2023 Aug 9.
2
UV-Visible Absorption Spectra of Solvated Molecules by Quantum Chemical Machine Learning.溶剂化分子的量子化学机器学习的紫外可见吸收光谱。
J Chem Theory Comput. 2022 Aug 9;18(8):4891-4902. doi: 10.1021/acs.jctc.1c01181. Epub 2022 Aug 1.
3
Temperature Dependent Properties of the Aqueous Electron.
水合电子的温度依赖性特性
Angew Chem Int Ed Engl. 2022 Sep 19;61(38):e202209398. doi: 10.1002/anie.202209398. Epub 2022 Aug 8.
4
Understanding the Temperature Dependence and Finite Size Effects in Ab Initio MD Simulations of the Hydrated Electron.从头算分子动力学模拟水合电子中温度依赖性和有限尺寸效应的理解。
J Chem Theory Comput. 2022 Aug 9;18(8):4973-4982. doi: 10.1021/acs.jctc.2c00335. Epub 2022 Jul 14.
5
Quantum simulations of neutral water clusters and singly-charged water cluster anions.中性水团簇和单电荷水团簇阴离子的量子模拟
Phys Chem Chem Phys. 2022 Jun 15;24(23):14440-14451. doi: 10.1039/d2cp01088g.
6
Reconstruction of Nuclear Ensemble Approach Electronic Spectra Using Probabilistic Machine Learning.使用概率机器学习重建核系综方法电子光谱。
J Chem Theory Comput. 2022 May 10;18(5):3052-3064. doi: 10.1021/acs.jctc.2c00004. Epub 2022 Apr 28.
7
Two Faces of the Two-Phase Thermodynamic Model.两相热力学模型的两面性。
J Chem Theory Comput. 2021 Nov 9;17(11):7187-7194. doi: 10.1021/acs.jctc.1c00156. Epub 2021 Oct 14.
8
Multiscale Modeling of Electronic Spectra Including Nuclear Quantum Effects.多尺度建模电子光谱包括核量子效应。
J Chem Theory Comput. 2021 Oct 12;17(10):6340-6352. doi: 10.1021/acs.jctc.1c00531. Epub 2021 Sep 28.
9
Multiconfigurational Quantum Chemistry Determinations of Absorption Cross Sections (σ) in the Gas Phase and Molar Extinction Coefficients (ε) in Aqueous Solution and Air-Water Interface.多组态量子化学方法测定气相中的吸收截面(σ)和水溶液及气-液界面中的摩尔消光系数(ε)。
J Chem Theory Comput. 2021 Jun 8;17(6):3571-3582. doi: 10.1021/acs.jctc.0c01083. Epub 2021 May 11.
10
Simulating the ghost: quantum dynamics of the solvated electron.模拟幽灵:溶剂化电子的量子动力学
Nat Commun. 2021 Feb 3;12(1):766. doi: 10.1038/s41467-021-20914-0.