Kohli Puneet, Nayyar Namita, Sharma Anukriti, Singh Amit Kumar, Lal Rup
Molecular Biology Laboratory, Department of Zoology, University of Delhi, Delhi 110007, India.
Int J Syst Evol Microbiol. 2016 Nov;66(11):4395-4400. doi: 10.1099/ijsem.0.001363. Epub 2016 Aug 2.
A Gram-staining-negative, red-pigmented, motile, rod-shaped bacterial strain, designated as W14T, was isolated from a hexachlorocyclohexane-contaminated dumpsite located in the northern part of India at Ummari Village, Lucknow. Phylogenetic analysis based on 16S rRNA gene sequence showed that the strain belongs to the genus Pontibacter with highest sequence similarity to Pontibacter lucknowensis DM9T (98.1 %). The 16S rRNA gene sequence similarity between strain W14T and members of other species of the genus Pontibacter ranged from 98.1 to 94.2 %. The DNA-DNA relatedness between strain W14T and P. lucknowensis DM9T was 33.7 % and with other closely related strains was found to be less than 20 %, confirming it to represent a novel species. The DNA G+C content of strain W14T was 51.3 mol%. Strain W14T was oxidase- and catalase-positive. The predominant cellular fatty acids were summed feature 4 (C17 : 1 iso I/anteiso B and C17 : 1 anteiso B/iso I), iso-C15 : 0 and iso-C17 : 0 3-OH. The polar lipid profile of strain W14T consisted of phosphatidylethanolamine, diphosphatidylglycerol, aminolipid and glycolipid. On the basis of the results obtained from DNA-DNA hybridization, biochemical and physiological tests in this study, strain W14T represents a novel species of the genus Pontibacter, for which the name Pontibacter virosus sp. nov. is proposed. The type strain is W14T (=MCC 2932T=DSM 100231T=KCTC 42941T).
从印度北部勒克瑙市乌马里村受六氯环己烷污染的垃圾场分离出一株革兰氏染色阴性、产红色色素、具运动性、杆状的细菌菌株,命名为W14T。基于16S rRNA基因序列的系统发育分析表明,该菌株属于Pontibacter属,与Lucknowensis Pontibacter DM9T的序列相似性最高(98.1%)。菌株W14T与Pontibacter属其他物种成员之间的16S rRNA基因序列相似性在98.1%至94.2%之间。菌株W14T与Lucknowensis Pontibacter DM9T的DNA-DNA相关性为33.7%,与其他密切相关菌株的相关性小于20%,证实它代表一个新物种。菌株W14T的DNA G+C含量为51.3 mol%。菌株W14T氧化酶和过氧化氢酶呈阳性。主要的细胞脂肪酸为总和特征4(C17:1异戊酸I/anteiso B和C17:1 anteiso B/异戊酸I)、异C15:0和异C17:0 3-OH。菌株W14T的极性脂质谱由磷脂酰乙醇胺、二磷脂酰甘油、氨基脂质和糖脂组成。根据本研究中DNA-DNA杂交、生化和生理测试的结果,菌株W14T代表Pontibacter属的一个新物种,为此提出Pontibacter virosus sp. nov.这个名称。模式菌株为W14T(=MCC 2932T=DSM 100231T=KCTC 42941T)。