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蓬蒂杆菌 ramchanderi 新种,从六氯环己烷污染的池塘沉积物中分离得到。

Pontibacter ramchanderi sp. nov., isolated from hexachlorocyclohexane-contaminated pond sediment.

机构信息

Molecular Biology Laboratory, Department of Zoology, University of Delhi, Delhi-110007, India.

IMTECH-Institute of Microbial Technology, Sector-39A, Chandigarh-160036, India.

出版信息

Int J Syst Evol Microbiol. 2013 Aug;63(Pt 8):2829-2834. doi: 10.1099/ijs.0.045948-0. Epub 2013 Jan 11.

Abstract

A Gram-stain-negative, motile, red pigmented, rod-shaped bacterium, designated strain LP43(T), was isolated from hexachlorocyclohexane (HCH)-contaminated soil sediment (Lucknow, India). Phylogenetic analysis based on 16S rRNA gene sequences indicated that the isolate formed a cluster with the genus Pontibacter in the phylum Bacteroidetes with sequence similarities ranging from 92.9 to 97.0 % with species of the genus Pontibacter. The DNA G+C content of strain LP43(T) was 59.1 mol%. The polar lipid profile of strain LP43(T) showed the presence of phosphatidylethanolamine, an unidentified aminophospholipid, unknown aminolipids and unknown polar lipids. Strain LP43(T) contained MK-7 as the predominant menaquinone and sym-homospermidine as the major polyamine. The major cellular fatty acids of strain LP43(T) were, iso-C15 : 0 (15.74 %), iso-C15 : 0 3-OH (7.57 %), iso-C17 : 0 3-OH (7.32 %), summed feature 4 (iso-C17 : 1 I/anteiso-C17 : 1 B) (31.22 %) and summed feature 8 (C18 : 1ω7c/ C18 : 1ω6c) (7.60 %). Based on the results of DNA-DNA hybridization and phenotypic and genotypic characteristics, strain LP43(T) represents a novel species of the genus Pontibacter, for which the name Pontibacter ramchanderi is proposed. The type strain is LP43(T) (= CCM 8406(T) = MCC 2019(T)).

摘要

一株革兰氏阴性、运动性、红色素产生、杆状的细菌,被命名为 LP43(T) 菌株,从六氯环己烷(HCH)污染的土壤沉积物(印度勒克瑙)中分离得到。基于 16S rRNA 基因序列的系统发育分析表明,该分离株与厚壁菌门的 Pontibacter 属形成一个聚类,与 Pontibacter 属的种的序列相似性为 92.9%至 97.0%。菌株 LP43(T) 的 DNA G+C 含量为 59.1mol%。菌株 LP43(T) 的极性脂谱显示存在磷脂酰乙醇胺、一种未鉴定的氨基磷脂、未知的氨基脂和未知的极性脂。菌株 LP43(T) 含有 MK-7 作为主要的menaquinone 和 sym-homospermidine 作为主要的多胺。菌株 LP43(T) 的主要细胞脂肪酸为,iso-C15:0(15.74%)、iso-C15:0 3-OH(7.57%)、iso-C17:0 3-OH(7.32%)、总和特征 4(iso-C17:1 I/anteiso-C17:1 B)(31.22%)和总和特征 8(C18:1ω7c/C18:1ω6c)(7.60%)。基于 DNA-DNA 杂交和表型及基因型特征的结果,菌株 LP43(T) 代表 Pontibacter 属的一个新种,提议命名为 Pontibacter ramchanderi。模式菌株为 LP43(T)=CCM 8406(T)=MCC 2019(T)。

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