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蛋白质组数据用于探究pBClin15对蜡样芽孢杆菌ATCC 14579的影响。

Proteome data to explore the impact of pBClin15 on Bacillus cereus ATCC 14579.

作者信息

Madeira Jean-Paul, Alpha-Bazin Béatrice, Armengaud Jean, Omer Hélène, Duport Catherine

机构信息

SQPOV, UMR0408, Avignon Université, INRA, F-84914 Avignon, France; CEA, DSV, IBiTec-S, SPI, Li2D,Laboratory "Innovative technologies for Detection and Diagnostics", Bagnols-sur-Cèze F-30200, France.

CEA, DSV, IBiTec-S, SPI, Li2D,Laboratory "Innovative technologies for Detection and Diagnostics", Bagnols-sur-Cèze F-30200, France.

出版信息

Data Brief. 2016 Jul 26;8:1243-6. doi: 10.1016/j.dib.2016.07.042. eCollection 2016 Sep.

DOI:10.1016/j.dib.2016.07.042
PMID:27547804
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4983103/
Abstract

This data article reports changes in the cellular and exoproteome of B. cereus cured from pBClin15.Time-course changes of proteins were assessed by high-throughput nanoLC-MS/MS. We report all the peptides and proteins identified and quantified in B. cereus with and without pBClin15. Proteins were classified into functional groups using the information available in the KEGG classification and we reported their abundance in term of normalized spectral abundance factor. The repertoire of experimentally confirmed proteins of B. cereus presented here is the largest ever reported, and provides new insights into the interplay between pBClin15 and its host B. cereus ATCC 14579. The data reported here is related to a published shotgun proteomics analysis regarding the role of pBClin15, "Deciphering the interactions between the Bacillus cereus linear plasmid, pBClin15, and its host by high-throughput comparative proteomics" Madeira et al. [1]. All the associated mass spectrometry data have been deposited in the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org) via the PRIDE partner repository (http://www.ebi.ac.uk/pride/), with the dataset identifier PRIDE: PXD001568, PRIDE: PXD002788 and PRIDE: PXD002789.

摘要

本数据文章报道了从pBClin15中去除的蜡样芽孢杆菌细胞和外蛋白质组的变化。通过高通量纳升液相色谱-串联质谱法评估蛋白质的时间进程变化。我们报告了在有和没有pBClin15的蜡样芽孢杆菌中鉴定和定量的所有肽段和蛋白质。利用京都基因与基因组百科全书（KEGG）分类中的可用信息将蛋白质分类为功能组，并以标准化谱丰度因子报告它们的丰度。本文展示的经实验确认的蜡样芽孢杆菌蛋白质库是有史以来报道的最大的，为pBClin15与其宿主蜡样芽孢杆菌ATCC 14579之间的相互作用提供了新的见解。这里报告的数据与一篇已发表的关于pBClin15作用的鸟枪法蛋白质组学分析相关，“通过高通量比较蛋白质组学解析蜡样芽孢杆菌线性质粒pBClin15与其宿主之间的相互作用”，马德拉等人[1]。所有相关的质谱数据已通过PRIDE合作伙伴库（http://www.ebi.ac.uk/pride/）存入蛋白质组交换联盟（http://proteomecentral.proteomexchange.org），数据集标识符为PRIDE:PXD001568、PRIDE:PXD002788和PRIDE:PXD002789。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dfa/4983103/8eae22935575/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dfa/4983103/8eae22935575/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dfa/4983103/8eae22935575/gr1.jpg

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