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Complete nitrification by Nitrospira bacteria.硝化螺菌属细菌实现完全硝化作用。
Nature. 2015 Dec 24;528(7583):504-9. doi: 10.1038/nature16461. Epub 2015 Nov 26.
2
Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones.海洋氧含量极小值区的需氧微生物呼吸作用
PLoS One. 2015 Jul 20;10(7):e0133526. doi: 10.1371/journal.pone.0133526. eCollection 2015.
3
LUMOS--A Sensitive and Reliable Optode System for Measuring Dissolved Oxygen in the Nanomolar Range.LUMOS——一种用于测量纳摩尔范围内溶解氧的灵敏且可靠的光极系统。
PLoS One. 2015 Jun 1;10(6):e0128125. doi: 10.1371/journal.pone.0128125. eCollection 2015.
4
Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone.海洋氧含量极小区域中群落基因转录和氮代谢的粒径分级分配
ISME J. 2015 Dec;9(12):2682-96. doi: 10.1038/ismej.2015.44. Epub 2015 Apr 7.
5
Nitrospina-like bacteria are the main drivers of nitrite oxidation in the seasonal upwelling area of the Eastern South Pacific (Central Chile ∼36°S).似硝化螺旋菌是东南太平洋季节性上升流区(智利中部 ∼36°S)亚硝酸盐氧化的主要驱动因素。
Environ Microbiol Rep. 2014 Dec;6(6):565-73. doi: 10.1111/1758-2229.12158.
6
Hadal biosphere: insight into the microbial ecosystem in the deepest ocean on Earth.超深渊生物圈:洞察地球上最深海洋中的微生物生态系统。
Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):E1230-6. doi: 10.1073/pnas.1421816112. Epub 2015 Feb 23.
7
Genomic and proteomic characterization of "Candidatus Nitrosopelagicus brevis": an ammonia-oxidizing archaeon from the open ocean.“暂定海洋亚硝化球菌”的基因组和蛋白质组特征:一种来自公海的氨氧化古菌。
Proc Natl Acad Sci U S A. 2015 Jan 27;112(4):1173-8. doi: 10.1073/pnas.1416223112. Epub 2015 Jan 13.
8
Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile.在智利北部沿海的低氧区,纳摩尔水平的氧气会可逆地抑制厌氧氨氧化和反硝化作用的反应速率及基因表达。
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9
A new highly sensitive method to assess respiration rates and kinetics of natural planktonic communities by use of the switchable trace oxygen sensor and reduced oxygen concentrations.一种通过使用可切换微量氧传感器和降低的氧浓度来评估天然浮游生物群落呼吸速率和动力学的新型高灵敏度方法。
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10
Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea.比较基因组学揭示了红海卤水湖界面中一种耐盐奇古菌的适应性。
ISME J. 2015 Feb;9(2):396-411. doi: 10.1038/ismej.2014.137. Epub 2014 Aug 8.

在海洋低氧区水体中纳摩尔级氧浓度下铵和亚硝酸盐的氧化作用

Ammonium and nitrite oxidation at nanomolar oxygen concentrations in oxygen minimum zone waters.

作者信息

Bristow Laura A, Dalsgaard Tage, Tiano Laura, Mills Daniel B, Bertagnolli Anthony D, Wright Jody J, Hallam Steven J, Ulloa Osvaldo, Canfield Donald E, Revsbech Niels Peter, Thamdrup Bo

机构信息

Nordic Center for Earth Evolution, Department of Biology, University of Southern Denmark, 5230 Odense M, Denmark;

Department of Bioscience, Arctic Research Centre, Aarhus University, 8000 Aarhus C, Denmark;

出版信息

Proc Natl Acad Sci U S A. 2016 Sep 20;113(38):10601-6. doi: 10.1073/pnas.1600359113. Epub 2016 Sep 6.

DOI:10.1073/pnas.1600359113
PMID:27601665
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5035861/
Abstract

A major percentage of fixed nitrogen (N) loss in the oceans occurs within nitrite-rich oxygen minimum zones (OMZs) via denitrification and anammox. It remains unclear to what extent ammonium and nitrite oxidation co-occur, either supplying or competing for substrates involved in nitrogen loss in the OMZ core. Assessment of the oxygen (O2) sensitivity of these processes down to the O2 concentrations present in the OMZ core (<10 nmol⋅L(-1)) is therefore essential for understanding and modeling nitrogen loss in OMZs. We determined rates of ammonium and nitrite oxidation in the seasonal OMZ off Concepcion, Chile at manipulated O2 levels between 5 nmol⋅L(-1) and 20 μmol⋅L(-1) Rates of both processes were detectable in the low nanomolar range (5-33 nmol⋅L(-1) O2), but demonstrated a strong dependence on O2 concentrations with apparent half-saturation constants (Kms) of 333 ± 130 nmol⋅L(-1) O2 for ammonium oxidation and 778 ± 168 nmol⋅L(-1) O2 for nitrite oxidation assuming one-component Michaelis-Menten kinetics. Nitrite oxidation rates, however, were better described with a two-component Michaelis-Menten model, indicating a high-affinity component with a Km of just a few nanomolar. As the communities of ammonium and nitrite oxidizers were similar to other OMZs, these kinetics should apply across OMZ systems. The high O2 affinities imply that ammonium and nitrite oxidation can occur within the OMZ core whenever O2 is supplied, for example, by episodic intrusions. These processes therefore compete with anammox and denitrification for ammonium and nitrite, thereby exerting an important control over nitrogen loss.

摘要

海洋中大部分固定氮(N)的损失是通过反硝化作用和厌氧氨氧化在富含亚硝酸盐的氧含量极低区(OMZ)内发生的。目前尚不清楚铵氧化和亚硝酸盐氧化在多大程度上同时发生,是为OMZ核心区氮损失过程提供底物还是与之竞争。因此,评估这些过程对低至OMZ核心区存在的氧(O2)浓度(<10 nmol·L⁻¹)的敏感性,对于理解和模拟OMZ中的氮损失至关重要。我们在智利康塞普西翁附近季节性OMZ中,在5 nmol·L⁻¹至20 μmol·L⁻¹的受控O2水平下,测定了铵氧化和亚硝酸盐氧化速率。在低纳摩尔范围(5 - 33 nmol·L⁻¹ O2)内,这两个过程的速率均可检测到,但表现出对O2浓度的强烈依赖性,假设为单组分米氏动力学,铵氧化的表观半饱和常数(Km)为333 ± 130 nmol·L⁻¹ O2,亚硝酸盐氧化的表观半饱和常数(Km)为778 ± 168 nmol·L⁻¹ O2。然而,亚硝酸盐氧化速率用双组分米氏模型能更好地描述,表明存在一个Km仅为几纳摩尔的高亲和力组分。由于铵氧化菌和亚硝酸盐氧化菌群落与其他OMZ相似,这些动力学应适用于整个OMZ系统。高O2亲和力意味着只要有O2供应,例如通过间歇性入侵,铵氧化和亚硝酸盐氧化就可以在OMZ核心区内发生。因此,这些过程与厌氧氨氧化和反硝化作用竞争铵和亚硝酸盐,从而对氮损失发挥重要控制作用。