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从一名接种过疫苗的10岁百日咳患者中分离出的百日咳博德特氏菌VA-190菌株的全基因组序列

Complete Genome Sequence of Bordetella pertussis Strain VA-190 Isolated from a Vaccinated 10-Year-Old Patient with Whooping Cough.

作者信息

Eby Joshua C, Turner Lauren, Nguyen Bryan, Kang June, Neville Carly, Temple Louise

机构信息

University of Virginia Health Systems, Charlottesville, Virginia, USA.

Virginia Division of Consolidated Laboratory Services, Richmond, Virginia, USA.

出版信息

Genome Announc. 2016 Sep 15;4(5):e00972-16. doi: 10.1128/genomeA.00972-16.

DOI:10.1128/genomeA.00972-16
PMID:27634997
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5026437/
Abstract

The number of cases of pertussis has increased in the United States despite vaccination. We present the genome of an isolate of Bordetella pertussis from a vaccinated patient from Virginia. The genome was sequenced by long-read methodology and compared to that of a clinical isolate used for laboratory studies, D420.

摘要

尽管进行了疫苗接种，但美国百日咳病例数仍有所增加。我们展示了一株来自弗吉尼亚州一名接种过疫苗患者的百日咳博德特氏菌分离株的基因组。该基因组采用长读长方法进行测序，并与用于实验室研究的临床分离株D420的基因组进行了比较。

相似文献

1
Complete Genome Sequence of Bordetella pertussis Strain VA-190 Isolated from a Vaccinated 10-Year-Old Patient with Whooping Cough.从一名接种过疫苗的10岁百日咳患者中分离出的百日咳博德特氏菌VA-190菌株的全基因组序列
Genome Announc. 2016 Sep 15;4(5):e00972-16. doi: 10.1128/genomeA.00972-16.
2
Complete Genome Sequence of Bordetella pertussis D420.百日咳博德特氏菌D420的全基因组序列
Genome Announc. 2015 Jun 11;3(3):e00657-15. doi: 10.1128/genomeA.00657-15.
3
The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement.百日咳博德特氏菌基因组进化史包括结构重排。
J Bacteriol. 2017 Mar 28;199(8). doi: 10.1128/JB.00806-16. Print 2017 Apr 15.
4
An outbreak of whooping cough in a highly vaccinated urban community.在一个疫苗接种率很高的城市社区爆发了百日咳。
J Trop Pediatr. 1991 Mar;37(2):71-6. doi: 10.1093/tropej/37.2.71.
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Role of pertussis toxin in causing symptoms of Bordetella parapertussis infection.百日咳毒素在引起副百日咳博德特氏菌感染症状中的作用。
Eur J Clin Microbiol Infect Dis. 1994 Jun;13(6):455-8. doi: 10.1007/BF01974634.
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Serum reactome induced by Bordetella pertussis infection and Pertussis vaccines: qualitative differences in serum antibody recognition patterns revealed by peptide microarray analysis.百日咳博德特氏菌感染和百日咳疫苗诱导的血清反应组：肽微阵列分析揭示血清抗体识别模式的定性差异
BMC Immunol. 2015 Jul 1;16:40. doi: 10.1186/s12865-015-0090-3.
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Efficacy of whooping-cough vaccines used in the United Kingdom before 1968. A preliminary report to the Director of the Public Health Laboratory service by the Public Health Laboratory Service Whooping-Cough Committee and Working Party.1968年以前在英国使用的百日咳疫苗的效力。公共卫生实验室服务百日咳委员会及工作组提交给公共卫生实验室服务主任的初步报告。
Br Med J. 1969 Nov 8;4(5679):329-33.
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Expert Rev Vaccines. 2005 Oct;4(5):757-78. doi: 10.1586/14760584.4.5.757.

本文引用的文献

1
Genome Structural Diversity among 31 Bordetella pertussis Isolates from Two Recent U.S. Whooping Cough Statewide Epidemics.来自美国近期两次全州范围百日咳流行的31株百日咳博德特氏菌分离株的基因组结构多样性
mSphere. 2016 May 11;1(3). doi: 10.1128/mSphere.00036-16. eCollection 2016 May-Jun.
2
Trends in Pertussis Diagnostic Testing in the United States, 1990 to 2012.1990年至2012年美国百日咳诊断检测趋势
Pediatr Infect Dis J. 2016 Jan;35(1):39-44. doi: 10.1097/INF.0000000000000921.
3
Complete Genome Sequence of Bordetella pertussis D420.百日咳博德特氏菌D420的全基因组序列
Genome Announc. 2015 Jun 11;3(3):e00657-15. doi: 10.1128/genomeA.00657-15.
4
Pertactin-negative Bordetella pertussis strains: evidence for a possible selective advantage.无荚膜百日咳博德特氏菌阴性菌株：可能具有选择优势的证据。
Clin Infect Dis. 2015 Jan 15;60(2):223-7. doi: 10.1093/cid/ciu788. Epub 2014 Oct 9.
5
Investigations into the emergence of pertactin-deficient Bordetella pertussis isolates in six European countries, 1996 to 2012.1996 年至 2012 年，六个欧洲国家中无 pertactin 缺陷百日咳博德特氏菌分离株出现的调查。
Euro Surveill. 2014 Aug 21;19(33):20881. doi: 10.2807/1560-7917.es2014.19.33.20881.
6
Global population structure and evolution of Bordetella pertussis and their relationship with vaccination.百日咳博德特氏菌的全球种群结构和进化及其与疫苗接种的关系。
mBio. 2014 Apr 22;5(2):e01074. doi: 10.1128/mBio.01074-14.
7
Rapid increase in pertactin-deficient Bordetella pertussis isolates, Australia.澳大利亚百日咳杆菌缺乏百日咳毒素菌株迅速增加。
Emerg Infect Dis. 2014 Apr;20(4):626-33. doi: 10.3201/eid2004.131478.
8
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
9
Prevalence and molecular characterization of pertactin-deficient Bordetella pertussis in the United States.美国百日咳杆菌中缺乏丝状血凝素的百日咳博德特氏菌的流行情况及分子特征
Clin Vaccine Immunol. 2014 Feb;21(2):119-25. doi: 10.1128/CVI.00717-13. Epub 2013 Nov 20.
10
Appearance of Bordetella pertussis strains not expressing the vaccine antigen pertactin in Finland.芬兰未表达疫苗抗原百日咳黏附素的百日咳博德特氏菌菌株的出现情况。
Clin Vaccine Immunol. 2012 Oct;19(10):1703-4. doi: 10.1128/CVI.00367-12. Epub 2012 Aug 22.