向日葵（Helianthus annuus L.）的完整线粒体基因组序列
Complete Mitochondrial Genome Sequence of Sunflower (Helianthus annuus L.).
作者信息
Grassa Christopher J, Ebert Daniel P, Kane Nolan C, Rieseberg Loren H
机构信息
Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, BC, Canada
Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, BC, Canada.
出版信息
Genome Announc. 2016 Sep 15;4(5):e00981-16. doi: 10.1128/genomeA.00981-16.
Abstract
This is the first complete mitochondrial genome sequence for sunflower and the first complete mitochondrial genome for any member of Asteraceae, the largest plant family, which includes over 23,000 named species. The master circle is 300,945-bp long and includes 27 protein-coding sequences, 18 tRNAs, and the 26S, 5S, and 18S rRNAs.
摘要
这是向日葵的首个完整线粒体基因组序列，也是菊科（最大的植物科，包含超过23000个已命名物种）中任何成员的首个完整线粒体基因组。主环长300,945碱基对，包含27个蛋白质编码序列、18个tRNA以及26S、5S和18S rRNA。
相似文献
1
Complete Mitochondrial Genome Sequence of Sunflower (Helianthus annuus L.).向日葵（Helianthus annuus L.）的完整线粒体基因组序列
Genome Announc. 2016 Sep 15;4(5):e00981-16. doi: 10.1128/genomeA.00981-16.
2
Mitochondrial genome organization and expression associated with cytoplasmic male sterility in sunflower (Helianthus annuus).向日葵（Helianthus annuus）细胞质雄性不育相关的线粒体基因组组织与表达
Plant J. 1991 Sep;1(2):185-93. doi: 10.1111/j.1365-313x.1991.00185.x.
3
HACRE1, a recently inserted copia-like retrotransposon of sunflower (Helianthus annuus L.).向日葵（Helianthus annuus L.）中插入的新拷贝型反转录转座子 HACRE1。
Genome. 2009 Nov;52(11):904-11. doi: 10.1139/g09-064.
4
The Insights into Mitochondrial Genomes of Sunflowers.向日葵线粒体基因组洞察
Plants (Basel). 2021 Aug 26;10(9):1774. doi: 10.3390/plants10091774.
5
The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements.向日葵（Helianthus annuus L.）基因组反映了转座元件偏性积累的近期历史。
Plant J. 2012 Oct;72(1):142-53. doi: 10.1111/j.1365-313X.2012.05072.x. Epub 2012 Jul 30.
6
Repetitive DNA and Plant Domestication: Variation in Copy Number and Proximity to Genes of LTR-Retrotransposons among Wild and Cultivated Sunflower (Helianthus annuus) Genotypes.重复DNA与植物驯化：野生和栽培向日葵（Helianthus annuus）基因型中LTR反转录转座子的拷贝数变化及其与基因的距离
Genome Biol Evol. 2015 Nov 24;7(12):3368-82. doi: 10.1093/gbe/evv230.
7
Identification and characterization of two bisabolene synthases from linear glandular trichomes of sunflower (Helianthus annuus L., Asteraceae).向日葵（菊科向日葵属植物向日葵Helianthus annuus L.）线性腺毛中两种没药烯合酶的鉴定与表征
Phytochemistry. 2016 Apr;124:29-37. doi: 10.1016/j.phytochem.2016.01.009. Epub 2016 Feb 12.
8
The complete external transcribed spacer of 18S-26S rDNA: amplification and phylogenetic utility at low taxonomic levels in asteraceae and closely allied families.18S - 26S核糖体DNA的完整外部转录间隔区：菊科及近缘科低分类水平下的扩增及系统发育应用
Mol Phylogenet Evol. 2000 Feb;14(2):285-303. doi: 10.1006/mpev.1999.0706.
9
Molecular analysis of a new cytoplasmic male sterile genotype in sunflower.向日葵一种新型细胞质雄性不育基因型的分子分析
FEBS Lett. 1992 Feb 3;297(1-2):159-63. doi: 10.1016/0014-5793(92)80350-p.
10
Ectopic expression of the HAM59 gene causes homeotic transformations of reproductive organs in sunflower (Helianthus annuus L.).HAM59基因的异位表达导致向日葵（Helianthus annuus L.）生殖器官的同源异型转变。
Dokl Biochem Biophys. 2015;461:110-3. doi: 10.1134/S160767291502012X. Epub 2015 May 5.
引用本文的文献
1
PMAT: an efficient plant mitogenome assembly toolkit using low-coverage HiFi sequencing data.PMAT：一种利用低覆盖度HiFi测序数据的高效植物线粒体基因组组装工具包。
Hortic Res. 2024 Jan 23;11(3):uhae023. doi: 10.1093/hr/uhae023. eCollection 2024 Mar.
2
Assembly and analysis of the complete mitochondrial genome of Forsythia suspensa (Thunb.) Vahl.连翘完整线粒体基因组的组装与分析。
BMC Genomics. 2023 Nov 23;24(1):708. doi: 10.1186/s12864-023-09821-4.
3
Characterization and phylogenetic analysis of the complete mitochondrial genome sequence of , the first representative from the family Ebenaceae.柿科首个代表物种——柿树完整线粒体基因组序列的特征分析与系统发育分析
Heliyon. 2022 Jul 6;8(7):e09870. doi: 10.1016/j.heliyon.2022.e09870. eCollection 2022 Jul.
4
Identification of Medicinal Plants for Quality Control Based on Organelle Genomes.基于细胞器基因组的药用植物质量控制鉴定
Front Pharmacol. 2022 Feb 14;13:842131. doi: 10.3389/fphar.2022.842131. eCollection 2022.
5
The Insights into Mitochondrial Genomes of Sunflowers.向日葵线粒体基因组洞察
Plants (Basel). 2021 Aug 26;10(9):1774. doi: 10.3390/plants10091774.
6
The complete mitochondrial genome sequence of (Asteraceae).菊科（菊科）的完整线粒体基因组序列。
Mitochondrial DNA B Resour. 2018 Apr 27;3(2):529-530. doi: 10.1080/23802359.2018.1468226.
7
Organization Features of the Mitochondrial Genome of Sunflower ( L.) with ANN2-Type Male-Sterile Cytoplasm.具有ANN2型雄性不育细胞质的向日葵线粒体基因组的组织特征
Plants (Basel). 2019 Oct 23;8(11):439. doi: 10.3390/plants8110439.
8
The alternative reality of plant mitochondrial DNA: One ring does not rule them all.植物线粒体 DNA 的另类现实：一环不及其余。
PLoS Genet. 2019 Aug 30;15(8):e1008373. doi: 10.1371/journal.pgen.1008373. eCollection 2019 Aug.
9
Assembly of the Mitochondrial Genome in the Campanulaceae Family Using Illumina Low-Coverage Sequencing.利用Illumina低覆盖度测序技术组装桔梗科植物线粒体基因组
Genes (Basel). 2018 Jul 30;9(8):383. doi: 10.3390/genes9080383.
10
Recombination Events Involving the atp9 Gene Are Associated with Male Sterility of CMS PET2 in Sunflower.涉及 atp9 基因的重组事件与向日葵 CMS PET2 的雄性不育有关。
Int J Mol Sci. 2018 Mar 11;19(3):806. doi: 10.3390/ijms19030806.
本文引用的文献
1
Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives.基因组扫描揭示了栽培向日葵中的候选驯化和改良基因，以及与野生近缘种的驯化后基因渐渗。
New Phytol. 2015 Apr;206(2):830-8. doi: 10.1111/nph.13255. Epub 2015 Jan 12.
2
The Population Genomics of Sunflowers and Genomic Determinants of Protein Evolution Revealed by RNAseq.向日葵的群体基因组学和 RNAseq 揭示的蛋白质进化的基因组决定因素。
Biology (Basel). 2012 Oct 25;1(3):575-96. doi: 10.3390/biology1030575.
3
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
4
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.SOAPdenovo2：一种经验丰富的、内存效率高的短读长从头组装器。
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
5
Recent nonhybrid origin of sunflower ecotypes in a novel habitat.新型生境中向日葵生态型的最近非杂交起源。
Mol Ecol. 2013 Feb;22(3):799-813. doi: 10.1111/mec.12038. Epub 2012 Oct 16.
6
A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats.生菜和向日葵（菊科）质体基因组的比较分析：分歧区域的鉴定和共享重复序列的分类。
Am J Bot. 2007 Mar;94(3):302-12. doi: 10.3732/ajb.94.3.302.
7
Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).从南瓜和西瓜的完整线粒体基因组序列探讨线粒体基因组大小的进化。
Mol Biol Evol. 2010 Jun;27(6):1436-48. doi: 10.1093/molbev/msq029. Epub 2010 Jan 29.
8
Fast and accurate short read alignment with Burrows-Wheeler transform.使用Burrows-Wheeler变换进行快速准确的短读比对。
Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18.
9
Identification of common molecular subsequences.常见分子子序列的鉴定
J Mol Biol. 1981 Mar 25;147(1):195-7. doi: 10.1016/0022-2836(81)90087-5.
10
Physical and gene organization of mitochondrial DNA in fertile and male sterile sunflower. CMS-associated alterations in structure and transcription of the atpA gene.可育和雄性不育向日葵中线粒体DNA的物理和基因组织。与细胞质雄性不育（CMS）相关的atpA基因结构和转录的改变。
Nucleic Acids Res. 1988 May 11;16(9):3787-99. doi: 10.1093/nar/16.9.3787.
Zotero 插件