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果蝇寄生蜂布氏柔茧蜂(膜翅目:姬小蜂科)重排的线粒体基因组

The rearranged mitochondrial genome of Leptopilina boulardi (Hymenoptera: Figitidae), a parasitoid wasp of Drosophila.

作者信息

Oliveira Daniel S, Gomes Tiago M F F, Loreto Elgion L S

机构信息

Curso Ciências Biológicas, Universidade Federal de Santa Maria (UFSM), Santa Maria, RS, Brazil.

Departamento de Bioquímica e Biologia Molecular (CCNE), Universidade Federal de Santa Maria (UFSM), Santa Maria, RS, Brazil.

出版信息

Genet Mol Biol. 2016 Oct-Dec;39(4):611-615. doi: 10.1590/1678-4685-GMB-2016-0062. Epub 2016 Sep 19.

DOI:10.1590/1678-4685-GMB-2016-0062
PMID:27648767
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5127158/
Abstract

The partial mitochondrial genome sequence of Leptopilina boulardi (Hymenoptera: Figitidae) was characterized. Illumina sequencing was used yielding 35,999,679 reads, from which 102,482 were utilized in the assembly. The length of the sequenced region of this partial mitochondrial genome is 15,417 bp, consisting of 13 protein-coding, two rRNA, and 21tRNA genes (the trnaM failed to be sequenced) and a partial A+T-rich region. All protein-coding genes start with ATN codons. Eleven protein-coding genes presented TAA stop codons, whereas ND6 and COII that presented TA, and T nucleotides, respectively. The gene pattern revealed extensive rearrangements compared to the typical pattern generally observed in insects. These rearrangements involve two protein-coding and two ribosomal genes, along with the 16 tRNA genes. This gene order is different from the pattern described for Ibalia leucospoides (Ibaliidae, Cynipoidea), suggesting that this particular gene order can be variable among Cynipoidea superfamily members. A maximum likelihood phylogenetic analysis of the main groups of Apocrita was performed using amino acid sequence of 13 protein-coding genes, showing monophyly for the Cynipoidea superfamily within the Hymenoptera phylogeny.

摘要

对布氏细蜂(膜翅目:褶翅小蜂科)的部分线粒体基因组序列进行了特征分析。采用Illumina测序技术,产生了35,999,679条 reads,其中102,482条用于组装。该部分线粒体基因组的测序区域长度为15,417 bp,由13个蛋白质编码基因、2个rRNA基因和21个tRNA基因(trnaM未能测序)以及一个部分富含A+T的区域组成。所有蛋白质编码基因均以ATN密码子起始。11个蛋白质编码基因呈现TAA终止密码子,而ND6和COII分别呈现TA和T核苷酸作为终止密码子。与昆虫中通常观察到的典型模式相比,基因模式显示出广泛的重排。这些重排涉及两个蛋白质编码基因、两个核糖体基因以及16个tRNA基因。这种基因顺序与白腹伊氏蜂(伊氏蜂科,瘿蜂总科)所描述的模式不同,表明这种特定的基因顺序在瘿蜂总科成员中可能是可变的。利用13个蛋白质编码基因的氨基酸序列对膜翅目主要类群进行了最大似然系统发育分析,结果表明在膜翅目系统发育中瘿蜂总科为单系群。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/59a7/5127158/1b34a3bb3d25/1415-4757-gmb-1678-4685-GMB-2016-0062-gf03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/59a7/5127158/2c7ce7609895/1415-4757-gmb-1678-4685-GMB-2016-0062-gf01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/59a7/5127158/adfc7dbc3c74/1415-4757-gmb-1678-4685-GMB-2016-0062-gf02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/59a7/5127158/1b34a3bb3d25/1415-4757-gmb-1678-4685-GMB-2016-0062-gf03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/59a7/5127158/2c7ce7609895/1415-4757-gmb-1678-4685-GMB-2016-0062-gf01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/59a7/5127158/adfc7dbc3c74/1415-4757-gmb-1678-4685-GMB-2016-0062-gf02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/59a7/5127158/1b34a3bb3d25/1415-4757-gmb-1678-4685-GMB-2016-0062-gf03.jpg

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