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葡萄霜霉病病原菌葡萄生单轴霉的基因组序列草图

Draft Genome Sequence of Plasmopara viticola, the Grapevine Downy Mildew Pathogen.

作者信息

Dussert Yann, Gouzy Jérôme, Richart-Cervera Sylvie, Mazet Isabelle D, Delière Laurent, Couture Carole, Legrand Ludovic, Piron Marie-Christine, Mestre Pere, Delmotte François

机构信息

SAVE, Bordeaux Sciences Agro, INRA, Villenave d'Ornon, France

LIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.

出版信息

Genome Announc. 2016 Sep 22;4(5):e00987-16. doi: 10.1128/genomeA.00987-16.

DOI:10.1128/genomeA.00987-16
PMID:27660780
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5034131/
Abstract

Plasmopara viticola is a biotrophic pathogenic oomycete responsible for grapevine downy mildew. We present here the first draft of the P. viticola genome. Analysis of this sequence will help in understanding plant-pathogen interactions in oomycetes, especially pathogen host specialization and adaptation to host resistance.

摘要

葡萄霜霉病菌是一种活体营养型致病卵菌，可引发葡萄霜霉病。我们在此展示葡萄霜霉病菌基因组的初稿。对该序列的分析将有助于理解卵菌中的植物-病原体相互作用，尤其是病原体宿主特异性以及对宿主抗性的适应性。

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本文引用的文献

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Adaptation of a plant pathogen to partial host resistance: selection for greater aggressiveness in grapevine downy mildew.植物病原体对部分寄主抗性的适应：葡萄霜霉病中更强致病力的选择
Evol Appl. 2016 Feb 24;9(5):709-25. doi: 10.1111/eva.12368. eCollection 2016 Jun.
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The Top 10 oomycete pathogens in molecular plant pathology.分子植物病理学中的十大卵菌病原体。
Mol Plant Pathol. 2015 May;16(4):413-34. doi: 10.1111/mpp.12190. Epub 2014 Dec 11.
3
Rapid and multiregional adaptation to host partial resistance in a plant pathogenic oomycete: evidence from European populations of Plasmopara viticola, the causal agent of grapevine downy mildew.植物病原卵菌对宿主部分抗性的快速多区域适应：来自葡萄霜霉病病原菌葡萄生单轴霉欧洲种群的证据。
Infect Genet Evol. 2014 Oct;27:500-8. doi: 10.1016/j.meegid.2013.10.017. Epub 2013 Oct 30.
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Genetic signature of a range expansion and leap-frog event after the recent invasion of Europe by the grapevine downy mildew pathogen Plasmopara viticola.葡萄霜霉病菌 Plasmopara viticola 近期入侵欧洲后，其种群扩张和跨越式事件的遗传特征。
Mol Ecol. 2013 May;22(10):2771-86. doi: 10.1111/mec.12293. Epub 2013 Mar 18.
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Nucleic Acids Res. 2009 Jan;37(1):289-97. doi: 10.1093/nar/gkn916. Epub 2008 Nov 28.
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Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
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CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.CEGMA：一种用于准确注释真核生物基因组中核心基因的流程。
Bioinformatics. 2007 May 1;23(9):1061-7. doi: 10.1093/bioinformatics/btm071. Epub 2007 Mar 1.