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马其顿乳杆菌679奶酪分离株的全基因组序列

Whole-Genome Sequence of the Cheese Isolate Streptococcus macedonicus 679.

作者信息

Papadimitriou Konstantinos, Mavrogonatou Eleni, Bolotin Alexander, Tsakalidou Effie, Renault Pierre

机构信息

Department of Food Science and Human Nutrition, Laboratory of Dairy Research, Agricultural University of Athens, Athens, Greece

Laboratory of Cell Proliferation and Ageing, Institute of Biosciences and Applications, National Centre for Scientific Research "Demokritos", Athens, Greece.

出版信息

Genome Announc. 2016 Sep 22;4(5):e01025-16. doi: 10.1128/genomeA.01025-16.

DOI:10.1128/genomeA.01025-16
PMID:27660795
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5034146/
Abstract

It is well recognized that Streptococcus macedonicus can populate artisanal fermented foods, especially those of dairy origin. However, the safety of S. macedonicus remains to be established. Here, we present the whole-genome sequence of strain 679, which was isolated from a French uncooked semihard cheese made with cow milk.

摘要

人们普遍认识到,马其顿链球菌可存在于手工制作的发酵食品中,尤其是乳制品发酵食品。然而,马其顿链球菌的安全性仍有待确定。在此,我们展示了从一种用牛奶制作的法国未煮熟半硬质奶酪中分离出的679菌株的全基因组序列。

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本文引用的文献

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Phylogenetic, epidemiological and functional analyses of the Streptococcus bovis/Streptococcus equinus complex through an overarching MLST scheme.通过全面的多位点序列分型方案对牛链球菌/马链球菌复合体进行系统发育、流行病学和功能分析。
BMC Microbiol. 2016 Jun 21;16(1):117. doi: 10.1186/s12866-016-0735-2.
2
Acquisition through horizontal gene transfer of plasmid pSMA198 by Streptococcus macedonicus ACA-DC 198 points towards the dairy origin of the species.通过水平基因转移,马其顿链球菌ACA-DC 198获得了质粒pSMA198,这表明该物种起源于乳制品环境。
PLoS One. 2015 Jan 13;10(1):e0116337. doi: 10.1371/journal.pone.0116337. eCollection 2015.
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Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products.构建乳制品微生物基因组目录为乳制品发酵产品的宏基因组分析开辟了新的视角。
BMC Genomics. 2014 Dec 13;15(1):1101. doi: 10.1186/1471-2164-15-1101.
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Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex.乳源分离株马其顿链球菌ACA-DC 198与牛链球菌/马链球菌复合体相关成员的比较基因组学。
BMC Genomics. 2014 Apr 8;15:272. doi: 10.1186/1471-2164-15-272.
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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释(RAST)。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
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Genet Mol Res. 2013 Aug 16;12(3):2982-9. doi: 10.4238/2013.August.16.2.
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
8
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J Bacteriol. 2012 Apr;194(7):1838-9. doi: 10.1128/JB.06804-11.