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RNA测序分析揭示了姜黄素针对……的候选靶点。 (原文未完整给出against的对象)

RNA-Seq Analysis Reveals Candidate Targets for Curcumin against .

作者信息

Liu Xuejiao, Wu Dousheng, Zhang Yongqiang, Zhou Hong, Lai Ting, Ding Wei

机构信息

College of Plant Protection, Southwest University, Chongqing 400716, China.

出版信息

Biomed Res Int. 2016;2016:2796260. doi: 10.1155/2016/2796260. Epub 2016 Sep 8.

Abstract

is an important agricultural pest with a broad host range. We previously identified curcumin as a promising acaricidal compound against . However, the acaricidal mechanism of curcumin remains unknown. In this study, RNA-seq was employed to analyze the transcriptome changes in treated with curcumin or the solvent. A total of 105,706,297 clean sequence reads were generated by sequencing, with more than 90% of the reads successfully mapped to the reference sequence. The RNA-seq identified 111 and 96 differentially expressed genes between curcumin- and solvent-treated mites at 24 and 48 h after treatment, respectively. GO enrichment analysis of differentially expressed genes showed that the cellular process was the dominant group at both time points. Finally, we screened 23 differentially expressed genes that were functionally identical or similar to the targets of common insecticide/acaricides or genes that were associated with mite detoxification and metabolism. Calmodulin, phospholipase A, and phospholipase C were activated upon curcumin treatment suggesting that the calcium channel related genes might play important roles in mite's response to curcumin. Overall our results revealed the global transcriptional changes in after curcumin treatment to enable further identification of the targets of curcumin in mites.

摘要

是一种寄主范围广泛的重要农业害虫。我们之前鉴定出姜黄素是一种有前景的抗杀螨化合物。然而,姜黄素的杀螨机制仍不清楚。在本研究中,采用RNA测序来分析用姜黄素或溶剂处理后的螨的转录组变化。测序共产生了105,706,297条干净序列 reads,超过90%的 reads 成功映射到参考序列。RNA测序分别在处理后24小时和48小时鉴定出姜黄素处理组和溶剂处理组螨之间有111个和96个差异表达基因。差异表达基因的GO富集分析表明,细胞过程在两个时间点都是主要类别。最后,我们筛选出23个差异表达基因,它们在功能上与常见杀虫剂/杀螨剂的靶标相同或相似,或者与螨的解毒和代谢相关基因相同或相似。姜黄素处理后钙调蛋白、磷脂酶A和磷脂酶C被激活,这表明钙通道相关基因可能在螨对姜黄素的反应中起重要作用。总体而言,我们的结果揭示了姜黄素处理后螨的全局转录变化,以便进一步鉴定姜黄素在螨中的靶标。

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