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热应激对河流型水牛(Bubalus Bubalis)乳腺上皮细胞的细胞及转录适应的影响

Impact of Heat Stress on Cellular and Transcriptional Adaptation of Mammary Epithelial Cells in Riverine Buffalo (Bubalus Bubalis).

作者信息

Kapila Neha, Sharma Ankita, Kishore Amit, Sodhi Monika, Tripathi Pawan K, Mohanty Ashok K, Mukesh Manishi

机构信息

ICAR-National Bureau of Animal Genetic Resources, Karnal-132001, Haryana, India.

Singhania University, Jhunjhunu, Rajasthan, India.

出版信息

PLoS One. 2016 Sep 28;11(9):e0157237. doi: 10.1371/journal.pone.0157237. eCollection 2016.

DOI:10.1371/journal.pone.0157237
PMID:27682256
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5040452/
Abstract

The present study aims to identify the heat responsive genes and biological pathways in heat stressed buffalo mammary epithelial cells (MECs). The primary mammary epithelial cells of riverine buffalo were exposed to thermal stress at 42°C for one hour. The cells were subsequently allowed to recover at 37°C and harvested at different time intervals (30 min to 48 h) along with control samples (un-stressed). In order to assess the impact of heat stress in buffalo MECs, several in-vitro cellular parameters (lactate dehydrogenase activity, cell proliferation assay, cellular viability, cell death and apoptosis) and transcriptional studies were conducted. The heat stress resulted in overall decrease in cell viability and cell proliferation of MECs while induction of cellular apoptosis and necrosis. The transcriptomic profile of heat stressed MECs was generated using Agilent 44 K bovine oligonucleotide array and at cutoff criteria of ≥3-or ≤3 fold change, a total of 153 genes were observed to be upregulated while 8 genes were down regulated across all time points post heat stress. The genes that were specifically up-regulated or down-regulated were identified as heat responsive genes. The upregulated genes in heat stressed MECs belonged to heat shock family viz., HSPA6, HSPB8, DNAJB2, HSPA1A. Along with HSPs, genes like BOLA, MRPL55, PFKFB3, PSMC2, ENDODD1, ARID5A, and SENP3 were also upregulated. Microarray data revealed that the heat responsive genes belonged to different functional classes viz., chaperons; immune responsive; cell proliferation and metabolism related. Gene ontology analysis revealed enrichment of several biological processes like; cellular process, metabolic process, response to stimulus, biological regulation, immune system processes and signaling. The transcriptome analysis data was further validated by RT-qPCR studies. Several HSP (HSP40, HSP60, HSP70, HSP90, and HSPB1), apoptotic (Bax and Bcl2), immune (IL6, TNFα and NF-kβ) and oxidative stress (GPX1 and DUSP1) related genes showed differential expression profile at different time points post heat stress. The transcriptional data strongly indicated the induction of survival/apoptotic mechanism in heat stressed buffalo MECs. The overrepresented pathways across all time points were; electron transport chain, cytochrome P450, apoptosis, MAPK, FAS and stress induction of HSP regulation, delta Notch signaling, apoptosis modulation by HSP70, EGFR1 signaling, cytokines and inflammatory response, oxidative stress, TNF-alpha and NF- kB signaling pathway. The study thus identified several genes from different functional classes and biological pathways that could be termed as heat responsive in buffalo MEC. The responsiveness of buffalo MECs to heat stress in the present study clearly suggested its suitability as a model to understand the modulation of buffalo mammary gland expression signature in response to environmental heat load.

摘要

本研究旨在鉴定热应激水牛乳腺上皮细胞(MECs)中的热响应基因和生物学途径。将河水牛的原代乳腺上皮细胞在42°C下暴露于热应激1小时。随后让细胞在37°C下恢复,并在不同时间间隔(30分钟至48小时)收获,同时收获对照样本(未应激)。为了评估热应激对水牛MECs的影响,进行了多项体外细胞参数(乳酸脱氢酶活性、细胞增殖测定、细胞活力、细胞死亡和凋亡)和转录研究。热应激导致MECs的细胞活力和细胞增殖总体下降,同时诱导细胞凋亡和坏死。使用安捷伦44K牛寡核苷酸阵列生成热应激MECs的转录组图谱,在≥3倍或≤3倍变化的截止标准下,在热应激后的所有时间点共观察到153个基因上调,8个基因下调。被特异性上调或下调的基因被鉴定为热响应基因。热应激MECs中上调的基因属于热休克家族,即HSPA6、HSPB8、DNAJB2、HSPA1A。除了热休克蛋白外,BOLA、MRPL55、PFKFB3、PSMC2、ENDODD1、ARID5A和SENP3等基因也上调。微阵列数据显示,热响应基因属于不同的功能类别,即伴侣蛋白;免疫响应;细胞增殖和代谢相关。基因本体分析揭示了几个生物学过程的富集,如细胞过程、代谢过程、对刺激的反应、生物调节、免疫系统过程和信号传导。转录组分析数据通过RT-qPCR研究进一步验证。几个热休克蛋白(HSP40、HSP60、HSP70、HSP90和HSPB1)、凋亡(Bax和Bcl2)、免疫(IL6、TNFα和NF-kβ)和氧化应激(GPX1和DUSP1)相关基因在热应激后的不同时间点显示出差异表达谱。转录数据强烈表明热应激水牛MECs中存在存活/凋亡机制的诱导。所有时间点上过度表达的途径有:电子传递链、细胞色素P450、凋亡、MAPK、FAS和热休克蛋白调节的应激诱导、δNotch信号传导、HSP70介导的凋亡调节、EGFR1信号传导、细胞因子和炎症反应、氧化应激、TNF-α和NF-κB信号通路。因此,本研究从不同功能类别和生物学途径中鉴定了几个可被称为水牛MEC热响应的基因。本研究中水牛MECs对热应激的反应性清楚地表明其适合作为一个模型来理解水牛乳腺表达特征在环境热负荷响应中的调节。

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