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新型微滴状深海嗜铁菌(Mariprofundus micogutta sp. nov.),一种从伊豆-小笠原弧的巴约纳伊斯海丘深海热液区分离出的新型铁氧化ζ-变形菌,以及深海嗜铁菌目(Mariprofundales ord. nov.)和ζ-变形菌纲(Zetaproteobacteria classis nov.)的描述

Mariprofundus micogutta sp. nov., a novel iron-oxidizing zetaproteobacterium isolated from a deep-sea hydrothermal field at the Bayonnaise knoll of the Izu-Ogasawara arc, and a description of Mariprofundales ord. nov. and Zetaproteobacteria classis nov.

作者信息

Makita Hiroko, Tanaka Emiko, Mitsunobu Satoshi, Miyazaki Masayuki, Nunoura Takuro, Uematsu Katsuyuki, Takaki Yoshihiro, Nishi Shinro, Shimamura Shigeru, Takai Ken

机构信息

Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, 237-0061, Japan.

Department of Applied Chemistry, Kanagawa Institute of Technology, 1030 Shimo-ogino, Atsugi, Kanagawa, 243-0292, Japan.

出版信息

Arch Microbiol. 2017 Mar;199(2):335-346. doi: 10.1007/s00203-016-1307-4. Epub 2016 Oct 20.

Abstract

A novel iron-oxidizing chemolithoautotrophic bacterium, strain ET2, was isolated from a deep-sea sediment in a hydrothermal field of the Bayonnaise knoll of the Izu-Ogasawara arc. Cells were bean-shaped, curved short rods. Growth was observed at a temperature range of 15-30 °C (optimum 25 °C, doubling time 24 h) and a pH range of 5.8-7.0 (optimum pH 6.4) in the presence of NaCl at a range of 1.0-4.0 % (optimum 2.75 %). The isolate was a microaerophilic, strict chemolithoautotroph capable of growing using ferrous iron and molecular oxygen (O) as the sole electron donor and acceptor, respectively; carbon dioxide as the sole carbon source; and either ammonium or nitrate as the sole nitrogen source. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that the new isolate was related to the only previously isolated Mariprofundus species, M. ferrooxydans. Although relatively high 16S rRNA gene similarity (95 %) was found between the new isolate and M. ferrooxydans, the isolate was distinct in terms of cellular fatty acid composition, genomic DNA G+C content and cell morphology. Furthermore, genomic comparison between ET2 and M. ferrooxydans PV-1 indicated that the genomic dissimilarity of these strains met the standard for species-level differentiation. On the basis of its physiological and molecular characteristics, strain ET2 (= KCTC 15556 = JCM 30585 ) represents a novel species of Mariprofundus, for which the name Mariprofundus micogutta is proposed. We also propose the subordinate taxa Mariprofundales ord. nov. and Zetaproteobacteria classis nov. in the phylum Proteobacteria.

摘要

从伊豆-小笠原弧的巴约纳塞海丘热液区的深海沉积物中分离出一种新型的铁氧化化能自养细菌,菌株ET2。细胞呈豆形,为弯曲短杆状。在15 - 30°C(最适温度25°C,倍增时间24小时)的温度范围内以及pH值为5.8 - 7.0(最适pH 6.4)的条件下,于1.0 - 4.0%(最适2.75%)的NaCl存在下观察到生长。该分离株是一种微需氧、严格的化能自养菌,能够分别利用亚铁和分子氧(O)作为唯一的电子供体和受体;以二氧化碳作为唯一的碳源;以铵或硝酸盐作为唯一的氮源。基于16S rRNA基因序列的系统发育分析表明,新分离株与之前唯一分离出的Mariprofundus属物种铁氧化Mariprofundus(M. ferrooxydans)相关。尽管在新分离株与铁氧化Mariprofundus之间发现了相对较高的16S rRNA基因相似性(95%),但该分离株在细胞脂肪酸组成、基因组DNA G+C含量和细胞形态方面有所不同。此外,ET2与铁氧化Mariprofundus PV-1之间的基因组比较表明,这些菌株的基因组差异符合物种水平分化的标准。基于其生理和分子特征,菌株ET2(= KCTC 15556 = JCM 30585)代表了Mariprofundus属的一个新物种,为此提出了Mariprofundus micogutta这个名称。我们还在变形菌门中提出了新的下级分类单元Mariprofundales目和Zetaproteobacteria纲。

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