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好氧和厌氧铁氧化菌共同驱动富铁海底热液喷口的反硝化和碳循环。

Aerobic and anaerobic iron oxidizers together drive denitrification and carbon cycling at marine iron-rich hydrothermal vents.

机构信息

School of Marine Science and Policy, University of Delaware, Newark, DE, USA.

The Cooperative Institute for Climate, Ocean, and Ecosystem Studies, University of Washington, Seattle, WA, USA.

出版信息

ISME J. 2021 May;15(5):1271-1286. doi: 10.1038/s41396-020-00849-y. Epub 2020 Dec 17.

Abstract

In principle, iron oxidation can fuel significant primary productivity and nutrient cycling in dark environments such as the deep sea. However, we have an extremely limited understanding of the ecology of iron-based ecosystems, and thus the linkages between iron oxidation, carbon cycling, and nitrate reduction. Here we investigate iron microbial mats from hydrothermal vents at Lō'ihi Seamount, Hawai'i, using genome-resolved metagenomics and metatranscriptomics to reconstruct potential microbial roles and interactions. Our results show that the aerobic iron-oxidizing Zetaproteobacteria are the primary producers, concentrated at the oxic mat surface. Their fixed carbon supports heterotrophs deeper in the mat, notably the second most abundant organism, Candidatus Ferristratum sp. (uncultivated gen. nov.) from the uncharacterized DTB120 phylum. Candidatus Ferristratum sp., described using nine high-quality metagenome-assembled genomes with similar distributions of genes, expressed nitrate reduction genes narGH and the iron oxidation gene cyc2 in situ and in response to Fe(II) in a shipboard incubation, suggesting it is an anaerobic nitrate-reducing iron oxidizer. Candidatus Ferristratum sp. lacks a full denitrification pathway, relying on Zetaproteobacteria to remove intermediates like nitrite. Thus, at Lō'ihi, anaerobic iron oxidizers coexist with and are dependent on aerobic iron oxidizers. In total, our work shows how key community members work together to connect iron oxidation with carbon and nitrogen cycling, thus driving the biogeochemistry of exported fluids.

摘要

原则上,铁的氧化可以为深海等黑暗环境中的初级生产力和营养循环提供燃料。然而,我们对基于铁的生态系统的生态学知之甚少,因此对铁氧化、碳循环和硝酸盐还原之间的联系知之甚少。在这里,我们使用基因组解析宏基因组学和宏转录组学来研究来自夏威夷洛希海底山热液喷口的铁微生物垫,以重建潜在的微生物作用和相互作用。我们的研究结果表明,好氧铁氧化的 Zetaproteobacteria 是主要的生产者,集中在有氧垫表面。它们固定的碳为垫内更深的异养生物提供支持,特别是第二丰富的生物,来自未被描述的 DTB120 门的未培养的 Ferristratum sp.(未被描述的属)。使用九个高质量的宏基因组组装基因组描述了 Ferristratum sp.,这些基因组的基因分布相似,在原位和在船上培养时对 Fe(II)的响应中表达硝酸盐还原基因 narGH 和铁氧化基因 cyc2,表明它是一种厌氧硝酸盐还原铁氧化菌。 Ferristratum sp. 缺乏完整的反硝化途径,依赖于 Zetaproteobacteria 去除亚硝酸盐等中间产物。因此,在洛希,厌氧铁氧化菌与好氧铁氧化菌共存并依赖于它们。总的来说,我们的工作表明了关键的社区成员如何协同工作,将铁氧化与碳和氮循环联系起来,从而推动了流出物的生物地球化学。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8288/8114936/76a31b6d3b28/41396_2020_849_Fig1_HTML.jpg

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