Suppr超能文献

环境DNA(eDNA)能在低丰度情况下检测到入侵的锈色小龙虾。

Environmental DNA (eDNA) detects the invasive rusty crayfish at low abundances.

作者信息

Dougherty Matthew M, Larson Eric R, Renshaw Mark A, Gantz Crysta A, Egan Scott P, Erickson Daniel M, Lodge David M

机构信息

Department of Biological Sciences University of Notre Dame Notre Dame IN 46556 USA; Catholic Theological Union Chicago IL 60615 USA.

Daniel P. Haerther Center for Conservation and Research John G. Shedd Aquarium Chicago IL 60605 USA; Environmental Change Initiative University of Notre Dame South Bend IN 46617 USA; Department of Natural Resources and Environmental Sciences University of Illinois Urbana IL 61801 USA.

出版信息

J Appl Ecol. 2016 Jun;53(3):722-732. doi: 10.1111/1365-2664.12621. Epub 2016 Feb 24.

Abstract

Early detection is invaluable for the cost-effective control and eradication of invasive species, yet many traditional sampling techniques are ineffective at the low population abundances found at the onset of the invasion process. Environmental DNA (eDNA) is a promising and sensitive tool for early detection of some invasive species, but its efficacy has not yet been evaluated for many taxonomic groups and habitat types.We evaluated the ability of eDNA to detect the invasive rusty crayfish and to reflect patterns of its relative abundance, in upper Midwest, USA, inland lakes. We paired conventional baited trapping as a measure of crayfish relative abundance with water samples for eDNA, which were analysed in the laboratory with a qPCR assay. We modelled detection probability for eDNA using relative abundance and site characteristics as covariates and also tested the relationship between eDNA copy number and relative abundance.We detected eDNA in all lakes where this species was collected by trapping, down to low relative abundances, as well as in two lakes where trap catch was zero. Detection probability of eDNA was well predicted by relative abundance of this species and lake water clarity. However, there was poor correspondence between eDNA copy number and relative abundance estimated by trap catches. . Our study demonstrates a field and laboratory protocol for eDNA monitoring of crayfish invasions, with results of statistical models that provide guidance of sampling effort and detection probabilities for researchers in other regions and systems. We propose eDNA be included as a tool in surveillance for invasive or imperilled crayfishes and other benthic arthropods.

摘要

早期检测对于经济高效地控制和根除入侵物种至关重要,然而,许多传统采样技术在入侵过程开始时发现的低种群丰度情况下效果不佳。环境DNA(eDNA)是一种有前景且灵敏的工具,可用于早期检测某些入侵物种,但尚未针对许多分类群和栖息地类型评估其功效。我们评估了在美国中西部内陆湖泊中,eDNA检测入侵性锈色螯虾及其反映相对丰度模式的能力。我们将传统的诱饵诱捕作为螯虾相对丰度的一种衡量方法,并与用于eDNA检测的水样配对,水样在实验室中通过定量聚合酶链反应(qPCR)分析。我们使用相对丰度和位点特征作为协变量对eDNA的检测概率进行建模,并测试了eDNA拷贝数与相对丰度之间的关系。我们在所有通过诱捕采集到该物种的湖泊中都检测到了eDNA,直至低相对丰度,以及在两个诱捕捕获量为零的湖泊中也检测到了。该物种的相对丰度和湖水清澈度能很好地预测eDNA的检测概率。然而,eDNA拷贝数与诱捕捕获量估计的相对丰度之间的对应关系较差。我们的研究展示了一种用于eDNA监测螯虾入侵的野外和实验室方案,统计模型的结果为其他地区和系统的研究人员提供了采样工作量和检测概率的指导。我们建议将eDNA纳入对入侵性或濒危螯虾及其他底栖节肢动物的监测工具中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eff1/5053277/0683a8c3f4e2/JPE-53-722-g001.jpg

相似文献

1
Environmental DNA (eDNA) detects the invasive rusty crayfish at low abundances.
J Appl Ecol. 2016 Jun;53(3):722-732. doi: 10.1111/1365-2664.12621. Epub 2016 Feb 24.
4
Assessing ecosystem vulnerability to invasive rusty crayfish (Orconectes rusticus).
Ecol Appl. 2011 Oct;21(7):2587-99. doi: 10.1890/10-2051.1.
6
The update and optimization of an eDNA assay to detect the invasive rusty crayfish (Faxonius rusticus).
PLoS One. 2021 Oct 29;16(10):e0259084. doi: 10.1371/journal.pone.0259084. eCollection 2021.
7
Hybrid zone dynamics and species replacement between Orconectes crayfishes in a northern Wisconsin lake.
Evolution. 2001 Jun;55(6):1153-66. doi: 10.1111/j.0014-3820.2001.tb00635.x.
8
Habitat explains patterns of population decline for an invasive crayfish.
Ecology. 2019 May;100(5):e02659. doi: 10.1002/ecy.2659. Epub 2019 Mar 28.
10
An analysis of the mechanisms governing species replacements in crayfish.
Oecologia. 1985 May;66(2):168-177. doi: 10.1007/BF00379851.

引用本文的文献

1
3
Nine Lessons about Aquatic Invasive Species from the North Temperate Lakes Long-Term Ecological Research (NTL-LTER) Program.
Bioscience. 2024 Aug 26;74(8):509-523. doi: 10.1093/biosci/biae062. eCollection 2024 Aug.
4
DNA barcoding is currently unreliable for species identification in most crayfishes.
Ecol Evol. 2024 Jul 21;14(7):e70050. doi: 10.1002/ece3.70050. eCollection 2024 Jul.
5
Environmental DNA reveals the genetic diversity and population structure of an invasive species in the Laurentian Great Lakes.
Proc Natl Acad Sci U S A. 2023 Sep 12;120(37):e2307345120. doi: 10.1073/pnas.2307345120. Epub 2023 Sep 5.
6
A multi-method approach for assessing the distribution of a rare, burrowing North American crayfish species.
PeerJ. 2023 Feb 20;11:e14748. doi: 10.7717/peerj.14748. eCollection 2023.
7
Spatio-temporal variability of eDNA signal and its implication for fish monitoring in lakes.
PLoS One. 2022 Aug 12;17(8):e0272660. doi: 10.1371/journal.pone.0272660. eCollection 2022.
9
Limitations of eDNA analysis for Carcinus maenas abundance estimations.
BMC Ecol Evol. 2022 Feb 7;22(1):14. doi: 10.1186/s12862-022-01969-z.

本文引用的文献

1
How good is a PCR efficiency estimate: Recommendations for precise and robust qPCR efficiency assessments.
Biomol Detect Quantif. 2015 Mar 11;3:9-16. doi: 10.1016/j.bdq.2015.01.005. eCollection 2015 Mar.
3
Multiple drivers of decline in the global status of freshwater crayfish (Decapoda: Astacidea).
Philos Trans R Soc Lond B Biol Sci. 2015 Feb 19;370(1662):20140060. doi: 10.1098/rstb.2014.0060.
4
Distance, flow and PCR inhibition: eDNA dynamics in two headwater streams.
Mol Ecol Resour. 2015 Jan;15(1):216-27. doi: 10.1111/1755-0998.12285. Epub 2014 Jun 13.
6
Isolation of PCR quality microbial community DNA from heavily contaminated environments.
J Microbiol Methods. 2014 Jul;102:1-7. doi: 10.1016/j.mimet.2014.04.005. Epub 2014 Apr 24.
7
Transport distance of invertebrate environmental DNA in a natural river.
PLoS One. 2014 Feb 11;9(2):e88786. doi: 10.1371/journal.pone.0088786. eCollection 2014.
9
Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals.
PLoS One. 2012;7(8):e41781. doi: 10.1371/journal.pone.0041781. Epub 2012 Aug 29.
10
Detection of a diverse marine fish fauna using environmental DNA from seawater samples.
PLoS One. 2012;7(8):e41732. doi: 10.1371/journal.pone.0041732. Epub 2012 Aug 29.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验