Feng Baomin, Ma Shisong, Chen Sixue, Zhu Ning, Zhang Shuxin, Yu Bin, Yu Yu, Le Brandon, Chen Xuemei, Dinesh-Kumar Savithramma P, Shan Libo, He Ping
Department of Biochemistry and Biophysics, Institute for Plant Genomics and Biotechnology, Texas A&M University, College Station, TX, USA.
Department of Plant Biology, University of California, Davis, CA, USA.
EMBO Rep. 2016 Dec;17(12):1799-1813. doi: 10.15252/embr.201642486. Epub 2016 Oct 18.
Protein poly(ADP-ribosyl)ation (PARylation) primarily catalyzed by poly(ADP-ribose) polymerases (PARPs) plays a crucial role in controlling various cellular responses. However, PARylation targets and their functions remain largely elusive. Here, we deployed an Arabidopsis protein microarray coupled with in vitro PARylation assays to globally identify PARylation targets in plants. Consistent with the essential role of PARylation in plant immunity, the forkhead-associated (FHA) domain protein DAWDLE (DDL), one of PARP2 targets, positively regulates plant defense to both adapted and non-adapted pathogens. Arabidopsis PARP2 interacts with and PARylates DDL, which was enhanced upon treatment of bacterial flagellin. Mass spectrometry and mutagenesis analysis identified multiple PARylation sites of DDL by PARP2. Genetic complementation assays indicate that DDL PARylation is required for its function in plant immunity. In contrast, DDL PARylation appears to be dispensable for its previously reported function in plant development partially mediated by the regulation of microRNA biogenesis. Our study uncovers many previously unknown PARylation targets and points to the distinct functions of DDL in plant immunity and development mediated by protein PARylation and small RNA biogenesis, respectively.
蛋白质多聚(ADP - 核糖)化(PARylation)主要由多聚(ADP - 核糖)聚合酶(PARPs)催化,在控制各种细胞反应中起关键作用。然而,PARylation的靶点及其功能在很大程度上仍然不清楚。在这里,我们利用拟南芥蛋白质微阵列结合体外PARylation分析,全面鉴定植物中的PARylation靶点。与PARylation在植物免疫中的重要作用一致,PARP2的靶点之一、叉头相关(FHA)结构域蛋白Dawdle(DDL)正向调节植物对适应性和非适应性病原体的防御。拟南芥PARP2与DDL相互作用并使其发生PARylation,在细菌鞭毛蛋白处理后这种作用增强。质谱分析和诱变分析确定了PARP2对DDL的多个PARylation位点。遗传互补分析表明,DDL的PARylation是其在植物免疫中发挥功能所必需的。相比之下,DDL的PARylation对于其先前报道的在部分由微小RNA生物合成调控介导的植物发育中的功能似乎是可有可无的。我们的研究揭示了许多以前未知的PARylation靶点,并指出DDL在植物免疫和发育中分别由蛋白质PARylation和小RNA生物合成介导的不同功能。