Modrzejewska Martyna, Gawronski Maciej, Skonieczna Magdalena, Zarakowska Ewelina, Starczak Marta, Foksinski Marek, Rzeszowska-Wolny Joanna, Gackowski Daniel, Olinski Ryszard
Department of Clinical Biochemistry, Faculty of Pharmacy, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karlowicza 24, 85-092 Bydgoszcz, Poland.
Biosystems Group, Institute of Automatic Control, Faculty of Automatics, Electronics, and Informatics, Silesian University of Technology, Akademicka 16, 44-100 Gliwice, Poland.
Free Radic Biol Med. 2016 Dec;101:378-383. doi: 10.1016/j.freeradbiomed.2016.10.535. Epub 2016 Nov 8.
The most plausible mechanism behind active demethylation of 5-methylcytosine involves TET proteins which participate in oxidation of 5-methylcytosine to 5-hydroxymethylcytosine; the latter is further oxidized to 5-formylcytosine and 5-carboxycytosine. 5-Hydroxymethyluracil can be also generated from thymine in a TET-catalyzed process. Ascorbate was previously demonstrated to enhance generation of 5-hydroxymethylcytosine in cultured cells. The aim of this study was to determine the levels of the abovementioned TET-mediated oxidation products of 5-methylcytosine and thymine after addition of ascorbate, using an isotope-dilution automated online two-dimensional ultra-performance liquid chromatography with electrospray ionization tandem mass spectrometry. Intracellular concentration of ascorbate was determined by means of ultra-performance liquid chromatography with UV detection. Irrespective of its concentration in culture medium (10-100µM) and inside the cell, ascorbate stimulated a moderate (2- to 3-fold) albeit persistent (up to 96-h) increase in the level of 5-hydroxymethylcytosine. However, exposure of cells to higher concentrations of ascorbate (100µM or 1mM) stimulated a substantial increase in 5-formylcytosine and 5-carboxycytosine levels. Moreover, for the first time we demonstrated a spectacular (up to 18.5-fold) increase in 5-hydroxymethyluracil content what, in turn, suggests that TET enzymes contributed to the presence of the modification in cellular DNA. These findings suggest that physiological concentrations of ascorbate in human serum (10-100µM) are sufficient to maintain a stable level of 5-hydroxymethylcytosine in cellular DNA. However, markedly higher concentrations of ascorbate (ca. 100µM in the cell milieu or ca. 1mM inside the cell) were needed to obtain a sustained increase in 5-formylcytosine, 5-carboxycytosine and 5-hydroxymethyluracil levels. Such feedback to elevated concentrations of ascorbate may reflect adaptation of the cell to environmental conditions.
5-甲基胞嘧啶主动去甲基化背后最合理的机制涉及TET蛋白,其参与将5-甲基胞嘧啶氧化为5-羟甲基胞嘧啶;后者进一步氧化为5-甲酰基胞嘧啶和5-羧基胞嘧啶。5-羟甲基尿嘧啶也可以在TET催化的过程中由胸腺嘧啶生成。先前已证明抗坏血酸可增强培养细胞中5-羟甲基胞嘧啶的生成。本研究的目的是使用同位素稀释自动在线二维超高效液相色谱与电喷雾电离串联质谱法,测定添加抗坏血酸后上述5-甲基胞嘧啶和胸腺嘧啶的TET介导氧化产物的水平。通过具有紫外检测的超高效液相色谱法测定细胞内抗坏血酸的浓度。无论其在培养基(10-100μM)和细胞内的浓度如何,抗坏血酸都会刺激5-羟甲基胞嘧啶水平适度(2至3倍)但持续(长达96小时)升高。然而,细胞暴露于更高浓度的抗坏血酸(100μM或1mM)会刺激5-甲酰基胞嘧啶和5-羧基胞嘧啶水平大幅升高。此外,我们首次证明5-羟甲基尿嘧啶含量显著增加(高达18.5倍),这反过来表明TET酶促成了细胞DNA中这种修饰的存在。这些发现表明,人血清中生理浓度的抗坏血酸(10-100μM)足以维持细胞DNA中5-羟甲基胞嘧啶的稳定水平。然而,需要明显更高浓度的抗坏血酸(细胞环境中约100μM或细胞内约1mM)才能使5-甲酰基胞嘧啶、5-羧基胞嘧啶和5-羟甲基尿嘧啶水平持续升高。这种对抗坏血酸浓度升高的反馈可能反映了细胞对环境条件的适应。