• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

从高度贫营养沉积物中分离出的sp.菌株C8S0的基因组草图序列

Draft Genome Sequence of sp. Strain C8S0, Isolated from a Highly Oligotrophic Sediment.

作者信息

Gallegos-Lopez S, Mejia-Ponce P M, Gonzalez-Salazar L A, Rodriguez-Orduña L, Souza-Saldivar V, Licona-Cassani C

机构信息

Centro de Biotecnología-FEMSA, Tecnológico de Monterrey, Monterrey, Mexico.

Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, Coyoacán, Mexico.

出版信息

Microbiol Resour Announc. 2020 Apr 2;9(14):e01441-19. doi: 10.1128/MRA.01441-19.

DOI:10.1128/MRA.01441-19
PMID:32241863
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7118189/
Abstract

spp. are prolific bacteria producing bioactive metabolites. We present the draft genome sequence of sp. strain C8S0, which was isolated from a highly oligotrophic sediment from the Cuatro Cienegas Basin (Mexico). The whole-genome assembly comprised 6,898,902 bp, with 18 biosynthetic gene clusters, including those for nonconventional terpenes, nonribosomal peptides, and polyketides.

摘要

某些物种是能产生生物活性代谢产物的多产细菌。我们展示了菌株C8S0的基因组草图序列，该菌株是从墨西哥夸特罗谢内加斯盆地高度贫营养的沉积物中分离出来的。全基因组组装包含6,898,902个碱基对，有18个生物合成基因簇，包括那些用于非常规萜类、非核糖体肽和聚酮化合物的基因簇。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb1/7118189/660609013575/MRA.01441-19-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb1/7118189/660609013575/MRA.01441-19-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cb1/7118189/660609013575/MRA.01441-19-f0001.jpg

相似文献

1
Draft Genome Sequence of sp. Strain C8S0, Isolated from a Highly Oligotrophic Sediment.从高度贫营养沉积物中分离出的sp.菌株C8S0的基因组草图序列
Microbiol Resour Announc. 2020 Apr 2;9(14):e01441-19. doi: 10.1128/MRA.01441-19.
2
Draft Genome Sequence of sp. Strain FB2, Isolated from Rice Rhizosphere.从水稻根际分离的sp. 菌株FB2的基因组序列草图
Microbiol Resour Announc. 2022 Jun 16;11(6):e0009022. doi: 10.1128/mra.00090-22. Epub 2022 May 9.
3
Draft genome sequence data of sp. FH025.sp. FH025的基因组序列数据草案。
Data Brief. 2021 May 12;36:107128. doi: 10.1016/j.dib.2021.107128. eCollection 2021 Jun.
4
Draft Genome Sequence of sp. Strain ICN903, Isolated from a Seaweed.从海藻中分离得到的 sp. 菌株 ICN903 的基因组序列草图
Microbiol Resour Announc. 2022 Sep 15;11(9):e0063522. doi: 10.1128/mra.00635-22. Epub 2022 Aug 18.
5
Draft Genome Sequence of an Anicemycin Producer, Streptomyces sp. TP-A0648.阿尼霉素产生菌链霉菌属TP-A0648的基因组序列草图
Genome Announc. 2017 Jan 12;5(2):e01468-16. doi: 10.1128/genomeA.01468-16.
6
Draft genome sequence of sp. TP-A0867, an alchivemycin producer.阿齐霉素产生菌sp. TP - A0867的基因组序列草图
Stand Genomic Sci. 2016 Oct 24;11:85. doi: 10.1186/s40793-016-0207-1. eCollection 2016.
7
First draft genome sequence of a strain from the genus Citricoccus.一株柠檬酸球菌属菌株的首个草案基因组序列。
J Bacteriol. 2011 Nov;193(21):6092-3. doi: 10.1128/JB.06045-11.
8
Draft Genome Sequence of Streptomyces sp. Strain RKND-216, an Antibiotic Producer Isolated from Marine Sediment in Prince Edward Island, Canada.链霉菌属菌株RKND - 216的基因组序列草图，该菌株是从加拿大爱德华王子岛海洋沉积物中分离出的抗生素产生菌。
Microbiol Resour Announc. 2019 Aug 29;8(35):e00870-19. doi: 10.1128/MRA.00870-19.
9
Draft Genome Sequence of the Marine-Derived, Anticancer Compound-Producing Bacterium sp. Strain GMY01.产抗癌化合物的海洋来源细菌sp. 菌株GMY01的基因组序列草图
Microbiol Resour Announc. 2023 Jun 20;12(6):e0136620. doi: 10.1128/mra.01366-20. Epub 2023 May 4.
10
Draft genome sequence of marine-derived Streptomyces sp. TP-A0598, a producer of anti-MRSA antibiotic lydicamycins.海洋来源的链霉菌属TP-A0598的基因组序列草图，抗耐甲氧西林金黄色葡萄球菌抗生素利迪霉素的产生菌
Stand Genomic Sci. 2015 Aug 26;10:58. doi: 10.1186/s40793-015-0046-5. eCollection 2015.

引用本文的文献

1
Integrative metabolo-genomics suggests a biosynthetic pathway for tetrangulol in Streptomyces sp. KL110A.整合代谢组学和基因组学揭示了链霉菌KL110A中四棱醇的生物合成途径。
World J Microbiol Biotechnol. 2025 Mar 11;41(3):101. doi: 10.1007/s11274-025-04298-7.
2
Plant Growth-Promoting Effect and Complete Genomic Sequence Analysis of the Beneficial Rhizosphere sp. GD-4 Isolated from .从……分离得到的有益根际菌株GD-4的促植物生长效应及全基因组序列分析
Microorganisms. 2025 Jan 27;13(2):286. doi: 10.3390/microorganisms13020286.
3
Draft genome sequence of sp. CC302I with non-canonical biosynthetic gene clusters for codon-readthrough activity.

本文引用的文献

1
Performance of neural network basecalling tools for Oxford Nanopore sequencing.基于神经网络的牛津纳米孔测序碱基调用工具的性能。
Genome Biol. 2019 Jun 24;20(1):129. doi: 10.1186/s13059-019-1727-y.
2
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.antiSMASH 5.0：二次代谢产物基因组挖掘管道的更新。
Nucleic Acids Res. 2019 Jul 2;47(W1):W81-W87. doi: 10.1093/nar/gkz310.
3
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
具有用于密码子通读活性的非规范生物合成基因簇的sp. CC302I的基因组序列草图
Microbiol Resour Announc. 2025 Feb 11;14(2):e0110924. doi: 10.1128/mra.01109-24. Epub 2025 Jan 21.
4
Phylogenetic classification of natural product biosynthetic gene clusters based on regulatory mechanisms.基于调控机制的天然产物生物合成基因簇的系统发育分类
Front Microbiol. 2023 Nov 8;14:1290473. doi: 10.3389/fmicb.2023.1290473. eCollection 2023.
5
Biosynthetic novelty index reveals the metabolic potential of rare actinobacteria isolated from highly oligotrophic sediments.生物合成新颖性指数揭示了从高度贫营养沉积物中分离出的稀有放线菌的代谢潜力。
Microb Genom. 2023 Jan;9(1). doi: 10.1099/mgen.0.000921.
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
4
The lost world of Cuatro Ciénegas Basin, a relictual bacterial niche in a desert oasis.失落的四泉谷盆地，沙漠绿洲中的古细菌生态位。
Elife. 2018 Nov 20;7:e38278. doi: 10.7554/eLife.38278.
5
MinIONQC: fast and simple quality control for MinION sequencing data.MinIONQC：适用于 MinION 测序数据的快速简单质控工具。
Bioinformatics. 2019 Feb 1;35(3):523-525. doi: 10.1093/bioinformatics/bty654.
6
The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level.微生物基因组图谱 (MiGA) 服务器：基于全基因组水平的古菌和细菌的分类和基因多样性分析。
Nucleic Acids Res. 2018 Jul 2;46(W1):W282-W288. doi: 10.1093/nar/gky467.
7
Actinobacteria phylogenomics, selective isolation from an iron oligotrophic environment and siderophore functional characterization, unveil new desferrioxamine traits.放线菌系统基因组学、从贫铁环境中选择性分离及铁载体功能表征揭示了去铁胺的新特性。
FEMS Microbiol Ecol. 2017 Sep 1;93(9). doi: 10.1093/femsec/fix086.
8
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.全细菌生物信息学数据库与分析资源中心PATRIC的改进。
Nucleic Acids Res. 2017 Jan 4;45(D1):D535-D542. doi: 10.1093/nar/gkw1017. Epub 2016 Nov 29.
9
Early Cambrian food webs on a trophic knife-edge? A hypothesis and preliminary data from a modern stromatolite-based ecosystem.早寒武世的食物网处于营养平衡的边缘？基于现代叠层石生态系统的假说与初步数据。
Ecol Lett. 2006 Mar;9(3):295-303. doi: 10.1111/j.1461-0248.2005.00873.x.
10
An endangered oasis of aquatic microbial biodiversity in the Chihuahuan desert.奇瓦瓦沙漠中一片濒危的水生微生物多样性绿洲。
Proc Natl Acad Sci U S A. 2006 Apr 25;103(17):6565-70. doi: 10.1073/pnas.0601434103. Epub 2006 Apr 17.