• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

功能毒理基因组学分析拓展了对酵母中甲醛毒性调节剂的认识。

Functional Toxicogenomic Profiling Expands Insight into Modulators of Formaldehyde Toxicity in Yeast.

作者信息

North Matthew, Gaytán Brandon D, Romero Carlos, De La Rosa Vanessa Y, Loguinov Alex, Smith Martyn T, Zhang Luoping, Vulpe Chris D

机构信息

Department of Nutritional Science and Toxicology, University of California Berkeley, CA, USA.

Division of Environmental Health Sciences, School of Public Health, University of California Berkeley, CA, USA.

出版信息

Front Genet. 2016 Nov 17;7:200. doi: 10.3389/fgene.2016.00200. eCollection 2016.

DOI:10.3389/fgene.2016.00200
PMID:27909446
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5112362/
Abstract

Formaldehyde (FA) is a commercially important chemical with numerous and diverse uses. Accordingly, occupational and environmental exposure to FA is prevalent worldwide. Various adverse effects, including nasopharyngeal, sinonasal, and lymphohematopoietic cancers, have been linked to FA exposure, prompting designation of FA as a human carcinogen by U.S. and international scientific entities. Although the mechanism(s) of FA toxicity have been well studied, additional insight is needed in regard to the genetic requirements for FA tolerance. In this study, a functional toxicogenomics approach was utilized in the model eukaryotic yeast to identify genes and cellular processes modulating the cellular toxicity of FA. Our results demonstrate mutant strains deficient in multiple DNA repair pathways-including homologous recombination, single strand annealing, and postreplication repair-were sensitive to FA, indicating FA may cause various forms of DNA damage in yeast. The SKI complex and its associated factors, which regulate mRNA degradation by the exosome, were also required for FA tolerance, suggesting FA may have unappreciated effects on RNA stability. Furthermore, various strains involved in osmoregulation and stress response were sensitive to FA. Together, our results are generally consistent with FA-mediated damage to both DNA and RNA. Considering DNA repair and RNA degradation pathways are evolutionarily conserved from yeast to humans, mechanisms of FA toxicity identified in yeast may be relevant to human disease and genetic susceptibility.

摘要

甲醛(FA)是一种具有多种重要商业用途的化学品。因此,在全球范围内,职业性和环境性接触甲醛的情况普遍存在。包括鼻咽癌、鼻窦癌和淋巴造血系统癌症在内的各种不良反应都与接触甲醛有关,这促使美国和国际科学机构将甲醛指定为人类致癌物。尽管对甲醛毒性的机制已经进行了深入研究,但在甲醛耐受性的遗传需求方面仍需要更多的见解。在这项研究中,我们在真核酵母模型中采用了功能毒理基因组学方法,以鉴定调节甲醛细胞毒性的基因和细胞过程。我们的结果表明,缺乏多种DNA修复途径(包括同源重组、单链退火和复制后修复)的突变菌株对甲醛敏感,这表明甲醛可能在酵母中导致多种形式的DNA损伤。SKI复合体及其相关因子通过外泌体调节mRNA降解,它们也是甲醛耐受性所必需的,这表明甲醛可能对RNA稳定性有尚未被认识到的影响。此外,参与渗透调节和应激反应的各种菌株对甲醛敏感。总之,我们的结果总体上与甲醛对DNA和RNA的损伤一致。考虑到DNA修复和RNA降解途径从酵母到人类在进化上是保守的,在酵母中鉴定出的甲醛毒性机制可能与人类疾病和遗传易感性相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/d203917d9119/fgene-07-00200-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/68ec88086cb4/fgene-07-00200-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/b8e92557006b/fgene-07-00200-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/dff49001d9b0/fgene-07-00200-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/3a82386a1b61/fgene-07-00200-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/abd6a2982320/fgene-07-00200-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/af57a4670f42/fgene-07-00200-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/ea066b70a9fa/fgene-07-00200-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/d203917d9119/fgene-07-00200-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/68ec88086cb4/fgene-07-00200-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/b8e92557006b/fgene-07-00200-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/dff49001d9b0/fgene-07-00200-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/3a82386a1b61/fgene-07-00200-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/abd6a2982320/fgene-07-00200-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/af57a4670f42/fgene-07-00200-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/ea066b70a9fa/fgene-07-00200-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9995/5112362/d203917d9119/fgene-07-00200-g0008.jpg

相似文献

1
Functional Toxicogenomic Profiling Expands Insight into Modulators of Formaldehyde Toxicity in Yeast.功能毒理基因组学分析拓展了对酵母中甲醛毒性调节剂的认识。
Front Genet. 2016 Nov 17;7:200. doi: 10.3389/fgene.2016.00200. eCollection 2016.
2
Applying genome-wide CRISPR to identify known and novel genes and pathways that modulate formaldehyde toxicity.应用全基因组 CRISPR 鉴定已知和新的基因和通路,调节甲醛毒性。
Chemosphere. 2021 Apr;269:128701. doi: 10.1016/j.chemosphere.2020.128701. Epub 2020 Oct 22.
3
Application of toxicogenomic profiling to evaluate effects of benzene and formaldehyde: from yeast to human.毒理基因组学分析在评估苯和甲醛影响中的应用:从酵母到人。
Ann N Y Acad Sci. 2014 Mar;1310(1):74-83. doi: 10.1111/nyas.12382. Epub 2014 Feb 26.
4
Identification of Genes That Modulate Susceptibility to Formaldehyde and Imatinib by Functional Genomic Screening in Human Haploid KBM7 Cells.通过对人类单倍体KBM7细胞进行功能基因组筛选鉴定调节甲醛和伊马替尼敏感性的基因。
Toxicol Sci. 2016 May;151(1):10-22. doi: 10.1093/toxsci/kfw032. Epub 2016 Mar 22.
5
An RNAi screen in human cell lines reveals conserved DNA damage repair pathways that mitigate formaldehyde sensitivity.在人细胞系中的 RNAi 筛选揭示了保守的 DNA 损伤修复途径,可减轻甲醛敏感性。
DNA Repair (Amst). 2018 Dec;72:1-9. doi: 10.1016/j.dnarep.2018.10.002. Epub 2018 Oct 9.
6
Selenium toxicity toward yeast as assessed by microarray analysis and deletion mutant library screen: a role for DNA repair.利用微阵列分析和缺失突变体文库筛选评估酵母中的硒毒性:DNA 修复的作用。
Chem Res Toxicol. 2012 Aug 20;25(8):1598-608. doi: 10.1021/tx300061n. Epub 2012 Jul 17.
7
Yeast RNA viruses as indicators of exosome activity: human exosome hCsl4p participates in RNA degradation in Saccharomyces cerevisiae'.酵母 RNA 病毒作为外泌体活性的指标:人类外泌体 hCsl4p 参与酿酒酵母中的 RNA 降解。
Yeast. 2011 Dec;28(12):821-32. doi: 10.1002/yea.1909. Epub 2011 Nov 8.
8
Increased levels of chromosomal aberrations and DNA damage in a group of workers exposed to formaldehyde.一组接触甲醛的工人的染色体畸变和DNA损伤水平升高。
Mutagenesis. 2015 Jul;30(4):463-73. doi: 10.1093/mutage/gev002. Epub 2015 Feb 22.
9
Low concentrations of formaldehyde induce DNA damage and delay DNA repair after UV irradiation in human skin cells.低浓度甲醛会导致人体皮肤细胞在紫外线照射后出现DNA损伤并延迟DNA修复。
Exp Dermatol. 2004 May;13(5):305-15. doi: 10.1111/j.0906-6705.2004.00157.x.
10
Genotoxic damage in pathology anatomy laboratory workers exposed to formaldehyde.暴露于甲醛的病理解剖实验室工作人员的遗传毒性损伤。
Toxicology. 2008 Oct 30;252(1-3):40-8. doi: 10.1016/j.tox.2008.07.056. Epub 2008 Jul 31.

引用本文的文献

1
The continuing evolution of barcode applications: Functional toxicology to cell lineage.条码应用的持续发展:从功能毒理学到细胞谱系。
Exp Biol Med (Maywood). 2022 Dec;247(23):2119-2127. doi: 10.1177/15353702221121600. Epub 2022 Sep 16.
2
Role of Dissimilative Pathway of (): Formaldehyde Toxicity and Energy Metabolism.()异化途径的作用:甲醛毒性与能量代谢
Microorganisms. 2022 Jul 20;10(7):1466. doi: 10.3390/microorganisms10071466.
3
Comparative transcriptome and metabolome analyses reveal the methanol dissimilation pathway of Pichia pastoris.

本文引用的文献

1
The Comparative Toxicogenomics Database: update 2017.比较毒理基因组学数据库:2017年更新版
Nucleic Acids Res. 2017 Jan 4;45(D1):D972-D978. doi: 10.1093/nar/gkw838. Epub 2016 Sep 19.
2
Identification of Genes That Modulate Susceptibility to Formaldehyde and Imatinib by Functional Genomic Screening in Human Haploid KBM7 Cells.通过对人类单倍体KBM7细胞进行功能基因组筛选鉴定调节甲醛和伊马替尼敏感性的基因。
Toxicol Sci. 2016 May;151(1):10-22. doi: 10.1093/toxsci/kfw032. Epub 2016 Mar 22.
3
Formaldehyde crosslinking: a tool for the study of chromatin complexes.
比较转录组和代谢组分析揭示了巴斯德毕赤酵母甲醇异化途径。
BMC Genomics. 2022 May 12;23(1):366. doi: 10.1186/s12864-022-08592-8.
4
The Identification of Genetic Determinants of Methanol Tolerance in Yeast Suggests Differences in Methanol and Ethanol Toxicity Mechanisms and Candidates for Improved Methanol Tolerance Engineering.酵母中甲醇耐受性遗传决定因素的鉴定表明甲醇和乙醇毒性机制存在差异以及提高甲醇耐受性工程的候选因素。
J Fungi (Basel). 2021 Jan 27;7(2):90. doi: 10.3390/jof7020090.
5
Development of a Simple and Powerful Analytical Method for Formaldehyde Detection and Quantitation in Blood Samples.一种用于血液样本中甲醛检测和定量的简单高效分析方法的开发
J Anal Methods Chem. 2020 Dec 30;2020:8810726. doi: 10.1155/2020/8810726. eCollection 2020.
6
Applying genome-wide CRISPR to identify known and novel genes and pathways that modulate formaldehyde toxicity.应用全基因组 CRISPR 鉴定已知和新的基因和通路,调节甲醛毒性。
Chemosphere. 2021 Apr;269:128701. doi: 10.1016/j.chemosphere.2020.128701. Epub 2020 Oct 22.
7
An RNAi screen in human cell lines reveals conserved DNA damage repair pathways that mitigate formaldehyde sensitivity.在人细胞系中的 RNAi 筛选揭示了保守的 DNA 损伤修复途径,可减轻甲醛敏感性。
DNA Repair (Amst). 2018 Dec;72:1-9. doi: 10.1016/j.dnarep.2018.10.002. Epub 2018 Oct 9.
甲醛交联:一种用于研究染色质复合物的工具。
J Biol Chem. 2015 Oct 30;290(44):26404-11. doi: 10.1074/jbc.R115.651679. Epub 2015 Sep 9.
4
DNA-protein crosslink repair.DNA-蛋白质交联修复。
Nat Rev Mol Cell Biol. 2015 Aug;16(8):455-60. doi: 10.1038/nrm4015. Epub 2015 Jul 1.
5
Evolution. Systematic humanization of yeast genes reveals conserved functions and genetic modularity.进化。酵母基因的系统性人源化揭示了保守功能和遗传模块性。
Science. 2015 May 22;348(6237):921-5. doi: 10.1126/science.aaa0769.
6
Formation, Accumulation, and Hydrolysis of Endogenous and Exogenous Formaldehyde-Induced DNA Damage.内源性和外源性甲醛诱导的DNA损伤的形成、积累及水解
Toxicol Sci. 2015 Jul;146(1):170-82. doi: 10.1093/toxsci/kfv079. Epub 2015 Apr 21.
7
A physiological significance of the functional interaction between Mus81 and Rad27 in homologous recombination repair.Mus81与Rad27在同源重组修复中的功能相互作用的生理意义。
Nucleic Acids Res. 2015 Feb 18;43(3):1684-99. doi: 10.1093/nar/gkv025. Epub 2015 Jan 27.
8
Chromosome-wide aneuploidy study of cultured circulating myeloid progenitor cells from workers occupationally exposed to formaldehyde.职业性接触甲醛工人培养循环髓系祖细胞的全染色体非整倍体研究。
Carcinogenesis. 2015 Jan;36(1):160-7. doi: 10.1093/carcin/bgu229. Epub 2014 Nov 12.
9
Functional toxicology: tools to advance the future of toxicity testing.功能毒理学:推动毒性测试未来发展的工具。
Front Genet. 2014 May 5;5:110. doi: 10.3389/fgene.2014.00110. eCollection 2014.
10
Application of toxicogenomic profiling to evaluate effects of benzene and formaldehyde: from yeast to human.毒理基因组学分析在评估苯和甲醛影响中的应用:从酵母到人。
Ann N Y Acad Sci. 2014 Mar;1310(1):74-83. doi: 10.1111/nyas.12382. Epub 2014 Feb 26.