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新种山药奥雷拉菌(Orrella dioscoreae gen. nov. sp. nov.)的基因组草图及描述,该菌是从桑给巴尔薯蓣叶尖分离出的一种新的产碱菌科物种。

Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis.

作者信息

Carlier Aurelien, Cnockaert Margo, Fehr Linda, Vandamme Peter, Eberl Leo

机构信息

Laboratory of Microbiology, Faculty of Sciences, Ghent University, K. L. Ledeganckstraat 35, B-9000 Ghent, Belgium.

Laboratory of Microbiology, Faculty of Sciences, Ghent University, K. L. Ledeganckstraat 35, B-9000 Ghent, Belgium.

出版信息

Syst Appl Microbiol. 2017 Jan;40(1):11-21. doi: 10.1016/j.syapm.2016.10.002. Epub 2016 Nov 24.

Abstract

Dioscorea sansibarensis is a monocot species of inedible yam native of tropical Africa and Madagascar. Leaves of D. sansibarensis feature prominent acumen glands that are densely colonized by bacteria. We describe here the isolation and characterization of bacteria from leaf glands of D. sansibarensis specimens obtained from various botanical gardens. Phylogenetic and phenotypic characterizations indicate that the isolates belong to a novel genus and species of the Alcaligenaceae family for which we propose the name Orrella dioscoreae gen. nov. sp. nov., with type strain LMG 29303 [=CIP 111009]. Strains isolated from different plants show limited phylogenetic and phenotypic diversity, indicating specific and tight association of the bacteria with the host plant. The analysis of the draft genome of strain LMG 29303 reveals features consistent with a recently evolved plant-associated lifestyle.

摘要

桑给巴尔薯蓣是一种单子叶植物,属于不可食用的山药,原产于热带非洲和马达加斯加。桑给巴尔薯蓣的叶子具有突出的尖状腺体,这些腺体被细菌密集定殖。我们在此描述了从各个植物园获得的桑给巴尔薯蓣标本叶腺中细菌的分离和鉴定。系统发育和表型特征表明,这些分离株属于产碱菌科的一个新属和新种,我们将其命名为山药奥雷拉菌(Orrella dioscoreae),新属名,新种名,模式菌株为LMG 29303 [=CIP 111009]。从不同植物中分离出的菌株显示出有限的系统发育和表型多样性,表明这些细菌与宿主植物存在特定且紧密的关联。对菌株LMG 29303基因组草图的分析揭示了与最近进化出的与植物相关的生活方式一致的特征。

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