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结直肠息肉的微小RNA图谱

The miRNA landscape of colorectal polyps.

作者信息

Slattery Martha L, Herrick Jennifer S, Wolff Roger K, Mullany Lila E, Stevens John R, Samowitz Wade

机构信息

Department of Medicine, University of Utah, Salt Lake City, UT, 84108.

Department of Mathematics and Statistics, Utah State University, Logan, UT, 84322 3900.

出版信息

Genes Chromosomes Cancer. 2017 May;56(5):347-353. doi: 10.1002/gcc.22436. Epub 2017 Feb 1.

Abstract

The genomic landscape of adenomas and polyps may help define disease pathways. Expression of miRNAs in adenomas and polyps may importantly contribute to these pathways. We evaluated miRNA expression in 293 polyp-normal colorectal mucosa pairs. Polyps were classified as either adenomatous polyp (AD), hyperplastic polyp (HP), or sessile serrated polyp (SSP). We compared these miRNA expression profiles in polyps to miRNA expression in microsatellite unstable (MSI) and stable (MSS) tumors. A False Discovery Rate of 0.05 based on Benjamini and Hochberg was used to adjust for multiple comparisons. There were 70 miRNAs with differential expression by polyp type with a fold change <0.75 or >1.34 after adjusting for multiple comparisons. The major differences in miRNA expression were observed between AD and SSP and AD and HP, with few differences in expression noted for SSP and HP. AD polyps were more likely to be upregulated from normal colonic mucosa, while SSP and HP were more likely to be downregulated from normal colonic mucosa. MiRNA expression in the SSP and HP tumors almost uniformly go in opposite directions from the MSS tumor miRNA expression and was mixed with MSI tumors. We conclude that different types of polyps have unique miRNA expression profiles. © 2017 Wiley Periodicals, Inc.

摘要

腺瘤和息肉的基因组格局可能有助于确定疾病发展途径。微小RNA(miRNA)在腺瘤和息肉中的表达可能对这些途径有重要影响。我们评估了293对息肉-正常结直肠黏膜中的miRNA表达情况。息肉被分类为腺瘤性息肉(AD)、增生性息肉(HP)或无蒂锯齿状息肉(SSP)。我们将这些息肉中的miRNA表达谱与微卫星不稳定(MSI)和稳定(MSS)肿瘤中的miRNA表达进行了比较。采用基于Benjamini和Hochberg方法的错误发现率0.05对多重比较进行校正。在多重比较校正后,有70种miRNA因息肉类型而存在差异表达,其变化倍数<0.75或>1.34。miRNA表达的主要差异见于AD与SSP以及AD与HP之间,而SSP与HP之间的表达差异较少。AD息肉相较于正常结肠黏膜更可能上调,而SSP和HP相较于正常结肠黏膜更可能下调。SSP和HP肿瘤中的miRNA表达几乎与MSS肿瘤的miRNA表达方向完全相反,且与MSI肿瘤的表达情况混合。我们得出结论,不同类型的息肉具有独特的miRNA表达谱。© 2017威利期刊公司。

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