• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

序列微异质性在嗜热四膜虫程序性DNA缺失的连接处产生。

Sequence microheterogeneity is generated at junctions of programmed DNA deletions in Tetrahymena thermophila.

作者信息

Austerberry C F, Snyder R O, Yao M C

机构信息

Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98104.

出版信息

Nucleic Acids Res. 1989 Sep 25;17(18):7263-72. doi: 10.1093/nar/17.18.7263.

DOI:10.1093/nar/17.18.7263
PMID:2798093
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC334806/
Abstract

Regulated DNA deletions are known to occur to thousands of specific DNA segments in Tetrahymena during macronuclear development. In this study we determined the precision of this event by examining the junction sequences produced by three different deletions in many independent caryonidal lines. 0.9 kb deletions in region M produce at least 3 types of junction sequences, of which two have been determined and found to be different by 4 bp. The alternative 0.6 kb deletions in this region are much less variable. 1.1 kb deletions in region R, known from a previous study to be slightly variable, produce two types of junction sequences which are different from each other by 3 bp. Thus, developmentally regulated deletions in Tetrahymena can produce sequence microheterogeneity at their junctions. This process contributes significantly to the diversification of Tetrahymena's somatic genome.

摘要

已知在大核发育过程中,四膜虫体内数千个特定DNA片段会发生受调控的DNA缺失。在本研究中,我们通过检查许多独立细胞核系中三种不同缺失产生的连接序列,确定了这一事件的精确性。区域M中的0.9 kb缺失至少产生3种连接序列类型,其中两种已确定,发现相差4个碱基对。该区域另一种0.6 kb缺失的变异性要小得多。区域R中的1.1 kb缺失,根据先前研究已知其变异性较小,产生两种连接序列,彼此相差3个碱基对。因此,四膜虫发育过程中受调控的缺失在其连接处可产生序列微异质性。这一过程对四膜虫体细胞基因组的多样化有显著贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fc/334806/b184aecebddb/nar00135-0131-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fc/334806/b25d5b30dcf6/nar00135-0129-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fc/334806/ec4d6424bdd8/nar00135-0129-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fc/334806/b184aecebddb/nar00135-0131-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fc/334806/b25d5b30dcf6/nar00135-0129-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fc/334806/ec4d6424bdd8/nar00135-0129-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fc/334806/b184aecebddb/nar00135-0131-a.jpg

相似文献

1
Sequence microheterogeneity is generated at junctions of programmed DNA deletions in Tetrahymena thermophila.序列微异质性在嗜热四膜虫程序性DNA缺失的连接处产生。
Nucleic Acids Res. 1989 Sep 25;17(18):7263-72. doi: 10.1093/nar/17.18.7263.
2
Sequence structures of two developmentally regulated, alternative DNA deletion junctions in Tetrahymena thermophila.嗜热四膜虫中两个发育调控的、替代性DNA缺失连接的序列结构。
Mol Cell Biol. 1988 Sep;8(9):3947-50. doi: 10.1128/mcb.8.9.3947-3950.1988.
3
Programmed DNA rearrangement from an intron during nuclear development in Tetrahymena thermophila: molecular analysis and identification of potential cis-acting sequences.嗜热四膜虫核发育过程中内含子介导的程序化DNA重排:分子分析及潜在顺式作用序列的鉴定
Nucleic Acids Res. 1996 May 15;24(10):1943-9. doi: 10.1093/nar/24.10.1943.
4
Nucleotide sequence structure and consistency of a developmentally regulated DNA deletion in Tetrahymena thermophila.嗜热四膜虫中发育调控型DNA缺失的核苷酸序列结构与一致性
Mol Cell Biol. 1987 Jan;7(1):435-43. doi: 10.1128/mcb.7.1.435-443.1987.
5
A programmed site-specific DNA rearrangement in Tetrahymena thermophila requires flanking polypurine tracts.嗜热栖热菌中的一种程序性位点特异性DNA重排需要侧翼多聚嘌呤序列。
Cell. 1990 Jun 29;61(7):1237-46. doi: 10.1016/0092-8674(90)90688-b.
6
Developmentally programmed DNA rearrangement in Tetrahymena thermophila: isolation and sequence characterization of three new alternative deletion systems.嗜热四膜虫中发育编程的DNA重排:三种新的替代性缺失系统的分离与序列特征分析
Biol Cell. 1996;86(2-3):111-20. doi: 10.1016/0248-4900(96)84773-3.
7
Modular structure in developmentally eliminated DNA in Tetrahymena may be a consequence of frequent insertions and deletions.四膜虫发育过程中被消除的DNA中的模块化结构可能是频繁插入和缺失的结果。
J Mol Biol. 2004 Mar 5;336(5):1075-86. doi: 10.1016/j.jmb.2003.12.065.
8
Alternate junctions and microheterogeneity of Tlr1, a developmentally regulated DNA rearrangement in Tetrahymena thermophila.嗜热四膜虫中Tlr1的交替连接和微异质性,一种发育调控的DNA重排。
J Eukaryot Microbiol. 1997 Sep-Oct;44(5):518-22. doi: 10.1111/j.1550-7408.1997.tb05733.x.
9
Developmentally regulated telomere addition in Tetrahymena thermophila.嗜热四膜虫中发育调控的端粒添加
Nucleic Acids Res. 1988 Jun 24;16(12):5569-85. doi: 10.1093/nar/16.12.5569.
10
Specific DNA rearrangements in synchronously developing nuclei of Tetrahymena.四膜虫同步发育细胞核中的特定DNA重排
Proc Natl Acad Sci U S A. 1984 Dec;81(23):7383-7. doi: 10.1073/pnas.81.23.7383.

引用本文的文献

1
Setting boundaries for genome-wide heterochromatic DNA deletions through flanking inverted repeats in Tetrahymena thermophila.通过四膜虫侧翼反向重复序列为全基因组异染色质 DNA 缺失设定边界。
Nucleic Acids Res. 2019 Jun 4;47(10):5181-5192. doi: 10.1093/nar/gkz209.
2
Structure of the germline genome of and relationship to the massively rearranged somatic genome.种系基因组的结构及其与大量重排的体细胞基因组的关系。
Elife. 2016 Nov 28;5:e19090. doi: 10.7554/eLife.19090.
3
The taming of the shrew: Regulation of a catalytically active domesticated transposase.

本文引用的文献

1
Synthesis and use of synthetic oligonucleotides.合成寡核苷酸的合成与应用。
Annu Rev Biochem. 1984;53:323-56. doi: 10.1146/annurev.bi.53.070184.001543.
2
Somatic generation of antibody diversity.抗体多样性的体细胞产生。
Nature. 1983 Apr 14;302(5909):575-81. doi: 10.1038/302575a0.
3
Joining of immunoglobulin heavy chain gene segments: implications from a chromosome with evidence of three D-JH fusions.免疫球蛋白重链基因片段的连接:来自一条有三个D-JH融合证据的染色体的启示
《驯悍记》:一种具有催化活性的驯化转座酶的调控
Mob Genet Elements. 2014 May 27;4:e29383. doi: 10.4161/mge.29383. eCollection 2014.
4
A domesticated PiggyBac transposase interacts with heterochromatin and catalyzes reproducible DNA elimination in Tetrahymena.家猪 PiggyBac 转座酶与异染色质相互作用,并在四膜虫中催化可重复的 DNA 消除。
PLoS Genet. 2013;9(12):e1004032. doi: 10.1371/journal.pgen.1004032. Epub 2013 Dec 12.
5
The MRI contrast agent gadoteridol enhances distribution of rAAV1 in the rat hippocampus.磁共振成像对比剂钆特醇增强 rAAV1 在大鼠海马中的分布。
Gene Ther. 2013 Dec;20(12):1172-7. doi: 10.1038/gt.2013.47. Epub 2013 Sep 19.
6
Biased transcription and selective degradation of small RNAs shape the pattern of DNA elimination in Tetrahymena.偏转录和小 RNA 的选择性降解塑造了四膜虫 DNA 消除的模式。
Genes Dev. 2012 Aug 1;26(15):1729-42. doi: 10.1101/gad.196493.112.
7
An essential role for the DNA breakage-repair protein Ku80 in programmed DNA rearrangements in Tetrahymena thermophila.在嗜热四膜虫程序性 DNA 重排中,DNA 断裂修复蛋白 Ku80 发挥重要作用。
Mol Biol Cell. 2012 Jun;23(11):2213-25. doi: 10.1091/mbc.E11-11-0952. Epub 2012 Apr 18.
8
Tetrahymena thermophila JMJD3 homolog regulates H3K27 methylation and nuclear differentiation.嗜热四膜虫JMJD3同源物调节H3K27甲基化和细胞核分化。
Eukaryot Cell. 2012 May;11(5):601-14. doi: 10.1128/EC.05290-11. Epub 2012 Mar 16.
9
Developmentally programmed, RNA-directed genome rearrangement in Tetrahymena.发育编程,四膜虫中的 RNA 指导的基因组重排。
Dev Growth Differ. 2012 Jan;54(1):108-19. doi: 10.1111/j.1440-169X.2011.01305.x. Epub 2011 Nov 22.
10
DNA rearrangements directed by non-coding RNAs in ciliates.纤毛原生动物中非编码 RNA 指导的 DNA 重排。
Wiley Interdiscip Rev RNA. 2010 Nov-Dec;1(3):376-87. doi: 10.1002/wrna.34.
Proc Natl Acad Sci U S A. 1982 Jul;79(13):4118-22. doi: 10.1073/pnas.79.13.4118.
4
Sequencing end-labeled DNA with base-specific chemical cleavages.通过碱基特异性化学切割对末端标记的DNA进行测序。
Methods Enzymol. 1980;65(1):499-560. doi: 10.1016/s0076-6879(80)65059-9.
5
Specific DNA rearrangements in synchronously developing nuclei of Tetrahymena.四膜虫同步发育细胞核中的特定DNA重排
Proc Natl Acad Sci U S A. 1984 Dec;81(23):7383-7. doi: 10.1073/pnas.81.23.7383.
6
A conserved nucleotide sequence at the sites of developmentally regulated chromosomal breakage in Tetrahymena.四膜虫发育调控的染色体断裂位点处的保守核苷酸序列。
Cell. 1987 Mar 13;48(5):779-88. doi: 10.1016/0092-8674(87)90075-4.
7
Nucleic acid splicing events occur frequently during macronuclear development in the protozoan Oxytricha nova and involve the elimination of unique DNA.在原生动物新游仆虫大核发育过程中,核酸剪接事件频繁发生,且涉及独特DNA的消除。
Genes Dev. 1987 Jun;1(4):323-36. doi: 10.1101/gad.1.4.323.
8
Programmed gene rearrangements altering gene expression.改变基因表达的程序性基因重排。
Science. 1987 Feb 6;235(4789):658-67. doi: 10.1126/science.3544215.
9
Transformation of Tetrahymena thermophila by microinjection of ribosomal RNA genes.通过显微注射核糖体RNA基因对嗜热四膜虫进行转化。
Proc Natl Acad Sci U S A. 1986 Jun;83(12):4369-73. doi: 10.1073/pnas.83.12.4369.
10
Oligonucleotide probes for the screening of recombinant DNA libraries.用于筛选重组DNA文库的寡核苷酸探针。
Methods Enzymol. 1987;152:432-42. doi: 10.1016/0076-6879(87)52050-x.