Nanotechnology Research Institute, School of Chemical Engineering, Babol University of Technology, Babol, Iran.
Department of Nanochemistry, Faculty of Pharmaceutical Chemistry, Pharmaceutical Sciences Branch, Islamic Azad University, (IAUPS), Tehran, Iran.
Phys Chem Chem Phys. 2017 Jan 18;19(3):1896-1908. doi: 10.1039/c6cp06672k.
In the present work, the adsorption of glycine amino acid and its zwitterionic form onto three different hexagonal sheets, namely graphene, boron-nitride (h-BN) and silicon carbide (h-SiC), has been investigated within the framework of Density Functional Theory (DFT) calculations. The energetics and geometrical parameters of the considered systems have been explored at the GGA-PBE level in combination with Grimme's empirical dispersion corrections with Becke-Johnson damping, the DFT-D3(BJ) method. Based on the obtained results, we found that both the glycine molecule and its zwitterionic conformation tend to be chemisorbed onto the surface of h-SiC (E ranges from -1.01 to -1.319 eV) while the types of interactions are recognized to be of non-covalent nature for the case of graphene (E ranges from -0.121 to -0.345 eV) and h-BN (E ranges from -0.103 eV to -0.325 eV) systems. Moreover, the empirical dispersion corrections applied in these calculations significantly improved the results and confirmed the crucial role of dispersion corrections in obtaining reliable geometries and adsorption energies. Our findings revealed that the electronic properties of the considered systems did not change during the adsorption process and these monolayers preserve their inherent electronic properties as they interact with the glycine molecule. Using the SMD implicit solvation model, the effect of solvation has also been evaluated by re-optimizing the structures within a medium with a dielectric constant of 78.39 (liquid water) and it has been shown that the strength of the interaction between the glycine conformers and hexagonal sheets has decreased. The accuracy of the obtained values has been evaluated by some benchmark calculations at the hybrid PW6B95 level of theory and reasonable consistency is found between the results of the PBE-D3 method and our benchmark system. In summary, h-SiC exhibited the highest affinity toward glycine conformers and gained an important edge over other monolayers. Our findings would actively encourage experimentalists to explore the potential applications of these materials in drug delivery, biofunctionalization of nanostructured monolayers as well as electronic and nanosensor devices.
在本工作中,我们在密度泛函理论(DFT)计算的框架内研究了甘氨酸氨基酸及其两性离子形式在三种不同的六方片上,即石墨烯、氮化硼(h-BN)和碳化硅(h-SiC)上的吸附。在 GGA-PBE 水平上结合 Grimme 的经验色散校正与 Becke-Johnson 阻尼,DFT-D3(BJ)方法,研究了所考虑系统的能量和几何参数。基于所得到的结果,我们发现甘氨酸分子及其两性离子构象都倾向于化学吸附在 h-SiC 的表面上(E 值范围为-1.01 到-1.319 eV),而对于石墨烯(E 值范围为-0.121 到-0.345 eV)和 h-BN(E 值范围为-0.103 eV 到-0.325 eV)系统,相互作用的类型被认为是非共价性质的。此外,在这些计算中应用的经验色散校正显著地改善了结果,并证实了色散校正在获得可靠的几何形状和吸附能方面的关键作用。我们的发现表明,在吸附过程中,所考虑的系统的电子性质没有发生变化,并且这些单层在与甘氨酸分子相互作用时保持其固有电子性质。使用 SMD 隐式溶剂化模型,通过在介电常数为 78.39 的介质中重新优化结构,评估了溶剂化的影响(液态水),并表明甘氨酸构象与六方片之间的相互作用强度降低。通过在混合 PW6B95 理论水平上的一些基准计算评估了所得到的值的准确性,在 PBE-D3 方法的结果和我们的基准系统之间发现了合理的一致性。总之,h-SiC 对甘氨酸构象表现出最高的亲和力,并在其他单层中获得了重要的优势。我们的研究结果将积极鼓励实验人员探索这些材料在药物输送、纳米结构单层的生物功能化以及电子和纳米传感器设备中的潜在应用。