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复杂性区域疼痛综合征常见单核苷酸多态性分析:全基因组关联研究方法与混合DNA策略

Analysis of Common Single Nucleotide Polymorphisms in Complex Regional Pain Syndrome: Genome Wide Association Study Approach and Pooled DNA Strategy.

作者信息

Janicki Piotr K, Alexander Guillermo M, Eckert Jill, Postula Marek, Schwartzman Robert J

机构信息

*Department of Anesthesiology and Perioperative Medicine, Penn State Hershey College of Medicine, Hershey, Pennsylvania

Department of Neurology, Drexel University, Philadelphia, Pennsylvania, USA.

出版信息

Pain Med. 2016 Dec;17(12):2344-2352. doi: 10.1093/pm/pnw133. Epub 2016 Jun 10.

Abstract

OBJECTIVE

The objective of this study was to use a genome-wide association (GWAS) approach and pooled DNA strategy to search for new genomic loci associated with complex regional pain syndrome (CRPS).

DESIGN

The study cohort consisted of 230 patients with established diagnosis of CRPS. The control group consisted of 230 age- and gender-matched subjects without chronic pain. We tested the association of common single nucleotide polymorphisms (SNPs), genotyped using a high-density microarray platform, with CRPS phenotype. This was followed by individual genotyping of the most significant SNPs identified in the microarray genomic scan, in both original discovery (N = 115) and independent verification (N = 115) groups of patients with CRPS, as well as in the appropriate matched control subjects.

RESULTS

The results of our study provide no support for the initial hypothesis of the existence of an association between any investigated genomic targets (including GWAS for all genomic loci available on the microarray, and focused scan of the HLA locus on chromosome 6) and CRPS phenotype.

CONCLUSIONS

Despite the fact that we interrogated about 83% of all of common SNPs in the human genome, we did not find evidence that any of the investigated common SNPs may be associated with CRPS phenotype.

摘要

目的

本研究的目的是采用全基因组关联(GWAS)方法和混合DNA策略,寻找与复杂性区域疼痛综合征(CRPS)相关的新基因组位点。

设计

研究队列由230例已确诊CRPS的患者组成。对照组由230名年龄和性别匹配、无慢性疼痛的受试者组成。我们使用高密度微阵列平台对常见单核苷酸多态性(SNP)进行基因分型,检测其与CRPS表型的关联。随后,对在微阵列基因组扫描中鉴定出的最显著SNP进行个体基因分型,这些SNP在CRPS患者的原始发现组(N = 115)和独立验证组(N = 115)以及适当匹配的对照受试者中进行检测。

结果

我们的研究结果不支持任何所研究的基因组靶点(包括对微阵列上所有可用基因组位点的GWAS以及对6号染色体上HLA位点的重点扫描)与CRPS表型之间存在关联的初始假设。

结论

尽管我们检测了人类基因组中约83%的常见SNP,但未发现证据表明任何所研究的常见SNP可能与CRPS表型相关。

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