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通过分子动力学模拟计算液体混合物热力学性质的精确方案。

Accurate schemes for calculation of thermodynamic properties of liquid mixtures from molecular dynamics simulations.

作者信息

Caro Miguel A, Laurila Tomi, Lopez-Acevedo Olga

机构信息

COMP Centre of Excellence in Computational Nanoscience, Department of Applied Physics, Aalto University, Espoo, Finland.

Department of Electrical Engineering and Automation, Aalto University, Espoo, Finland.

出版信息

J Chem Phys. 2016 Dec 28;145(24):244504. doi: 10.1063/1.4973001.

Abstract

We explore different schemes for improved accuracy of entropy calculations in aqueous liquid mixtures from molecular dynamics (MD) simulations. We build upon the two-phase thermodynamic (2PT) model of Lin et al. [J. Chem. Phys. 119, 11792 (2003)] and explore new ways to obtain the partition between the gas-like and solid-like parts of the density of states, as well as the effect of the chosen ideal "combinatorial" entropy of mixing, both of which have a large impact on the results. We also propose a first-order correction to the issue of kinetic energy transfer between degrees of freedom (DoF). This problem arises when the effective temperatures of translational, rotational, and vibrational DoF are not equal, either due to poor equilibration or reduced system size/time sampling, which are typical problems for ab initio MD. The new scheme enables improved convergence of the results with respect to configurational sampling, by up to one order of magnitude, for short MD runs. To ensure a meaningful assessment, we perform MD simulations of liquid mixtures of water with several other molecules of varying sizes: methanol, acetonitrile, N, N-dimethylformamide, and n-butanol. Our analysis shows that results in excellent agreement with experiment can be obtained with little computational effort for some systems. However, the ability of the 2PT method to succeed in these calculations is strongly influenced by the choice of force field, the fluidicity (hard-sphere) formalism employed to obtain the solid/gas partition, and the assumed combinatorial entropy of mixing. We tested two popular force fields, GAFF and OPLS with SPC/E water. For the mixtures studied, the GAFF force field seems to perform as a slightly better "all-around" force field when compared to OPLS+SPC/E.

摘要

我们探索了不同的方案,以提高通过分子动力学(MD)模拟计算水性液体混合物中熵的准确性。我们基于Lin等人的两相热力学(2PT)模型[《化学物理杂志》119, 11792 (2003)],探索了获得态密度中类气态部分和类固态部分之间的划分的新方法,以及所选理想“组合”混合熵的影响,这两者对结果都有很大影响。我们还针对自由度(DoF)之间动能转移的问题提出了一阶校正。当平移、旋转和振动自由度的有效温度不相等时,就会出现这个问题,这要么是由于平衡不佳,要么是由于系统尺寸/时间采样减少,这是从头算MD的典型问题。对于短MD运行,新方案能够使结果在构型采样方面的收敛性提高多达一个数量级。为了确保进行有意义的评估,我们对水与几种不同大小的其他分子(甲醇、乙腈、N, N -二甲基甲酰胺和正丁醇)的液体混合物进行了MD模拟。我们的分析表明,对于某些系统,只需很少的计算量就能获得与实验结果非常吻合的结果。然而,2PT方法在这些计算中成功的能力受到力场的选择、用于获得固/气划分的流体动力学(硬球)形式主义以及假定的组合混合熵的强烈影响。我们测试了两种流行的力场,GAFF和与SPC/E水结合的OPLS。对于所研究的混合物,与OPLS + SPC/E相比,GAFF力场似乎表现为一个略好的“全能”力场。

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