• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

果蝇中的三维基因组组织与功能

Three-Dimensional Genome Organization and Function in Drosophila.

作者信息

Schwartz Yuri B, Cavalli Giacomo

机构信息

Department of Molecular Biology, Umeå University, 901 87 Umeå, Sweden

Human Genetics, Centre National de la Recherche Scientifique, UPR1142 and University of Montpellier, 34396 Montpellier Cedex 5, France

出版信息

Genetics. 2017 Jan;205(1):5-24. doi: 10.1534/genetics.115.185132.

DOI:10.1534/genetics.115.185132
PMID:28049701
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5223523/
Abstract

Understanding how the metazoan genome is used during development and cell differentiation is one of the major challenges in the postgenomic era. Early studies in Drosophila suggested that three-dimensional (3D) chromosome organization plays important regulatory roles in this process and recent technological advances started to reveal connections at the molecular level. Here we will consider general features of the architectural organization of the Drosophila genome, providing historical perspective and insights from recent work. We will compare the linear and spatial segmentation of the fly genome and focus on the two key regulators of genome architecture: insulator components and Polycomb group proteins. With its unique set of genetic tools and a compact, well annotated genome, Drosophila is poised to remain a model system of choice for rapid progress in understanding principles of genome organization and to serve as a proving ground for development of 3D genome-engineering techniques.

摘要

理解后生动物基因组在发育和细胞分化过程中是如何被利用的,是后基因组时代的主要挑战之一。早期对果蝇的研究表明,三维(3D)染色体组织在这一过程中发挥着重要的调控作用,而最近的技术进步开始在分子水平上揭示其中的联系。在这里,我们将探讨果蝇基因组结构组织的一般特征,提供历史视角和近期研究的见解。我们将比较果蝇基因组的线性和空间分割,并聚焦于基因组结构的两个关键调节因子:绝缘子成分和多梳蛋白家族。凭借其独特的一套遗传工具以及紧凑且注释完善的基因组,果蝇有望继续成为理解基因组组织原理取得快速进展的首选模型系统,并作为3D基因组工程技术开发的试验场。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e93f/5223523/fc6a5d6ec3a4/5fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e93f/5223523/a9f120b27c9d/5fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e93f/5223523/568f58a9aae4/5fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e93f/5223523/375213061b3d/5fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e93f/5223523/fc6a5d6ec3a4/5fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e93f/5223523/a9f120b27c9d/5fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e93f/5223523/568f58a9aae4/5fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e93f/5223523/375213061b3d/5fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e93f/5223523/fc6a5d6ec3a4/5fig4.jpg

相似文献

1
Three-Dimensional Genome Organization and Function in Drosophila.果蝇中的三维基因组组织与功能
Genetics. 2017 Jan;205(1):5-24. doi: 10.1534/genetics.115.185132.
2
Chromatin insulators: regulatory mechanisms and epigenetic inheritance.染色质绝缘子:调控机制与表观遗传继承
Mol Cell. 2008 Oct 10;32(1):1-9. doi: 10.1016/j.molcel.2008.08.017.
3
Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development.多梳依赖的染色质环在果蝇发育过程中的基因沉默中起作用。
Mol Cell. 2018 Jul 5;71(1):73-88.e5. doi: 10.1016/j.molcel.2018.05.032. Epub 2018 Jun 28.
4
Cell Fate and Developmental Regulation Dynamics by Polycomb Proteins and 3D Genome Architecture.多梳蛋白和 3D 基因组结构对细胞命运和发育调控的动态影响。
Bioessays. 2019 Mar;41(3):e1800222. doi: 10.1002/bies.201800222. Epub 2019 Feb 22.
5
Distinct Roles of Chromatin Insulator Proteins in Control of the Drosophila Bithorax Complex.染色质绝缘子蛋白在果蝇双胸复合体调控中的不同作用
Genetics. 2016 Feb;202(2):601-17. doi: 10.1534/genetics.115.179309. Epub 2015 Dec 29.
6
A chromatin insulator driving three-dimensional Polycomb response element (PRE) contacts and Polycomb association with the chromatin fiber.一个染色质绝缘子驱动三维多梳抑制复合物反应元件(PRE)接触和多梳蛋白与染色质纤维的关联。
Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2294-9. doi: 10.1073/pnas.1002059108. Epub 2011 Jan 24.
7
Genomic organization of gypsy chromatin insulators in Drosophila melanogaster.黑腹果蝇中gypsy染色质绝缘子的基因组组织
Genetics. 2006 Apr;172(4):2337-49. doi: 10.1534/genetics.105.054742. Epub 2006 Feb 1.
8
Chromatin insulators and long-distance interactions in Drosophila.果蝇中的染色质绝缘子和长距离相互作用。
FEBS Lett. 2014 Jan 3;588(1):8-14. doi: 10.1016/j.febslet.2013.10.039. Epub 2013 Nov 5.
9
Super-resolution imaging reveals distinct chromatin folding for different epigenetic states.超分辨率成像揭示了不同表观遗传状态下独特的染色质折叠。
Nature. 2016 Jan 21;529(7586):418-22. doi: 10.1038/nature16496. Epub 2016 Jan 13.
10
Banding Pattern of Polytene Chromosomes as a Representation of Universal Principles of Chromatin Organization into Topological Domains.多线染色体的带型作为染色质组织成拓扑结构域的普遍原则的一种体现。
Biochemistry (Mosc). 2018 Apr;83(4):338-349. doi: 10.1134/S0006297918040053.

引用本文的文献

1
The homie insulator has sub-elements with different insulating and long-range pairing properties.同位绝缘体具有具有不同绝缘和长程配对特性的子元件。
Genetics. 2025 Apr 17;229(4). doi: 10.1093/genetics/iyaf032.
2
The insulator has sub-elements with different insulating and long-range pairing properties.该绝缘体具有具有不同绝缘和长程配对特性的子元件。
bioRxiv. 2025 Jan 26:2024.02.01.578481. doi: 10.1101/2024.02.01.578481.
3
Dan forms condensates in neuroblasts and regulates nuclear architecture and progenitor competence in vivo.

本文引用的文献

1
Coordinate redeployment of PRC1 proteins suppresses tumor formation during Drosophila development.PRC1蛋白的协同重新部署在果蝇发育过程中抑制肿瘤形成。
Nat Genet. 2016 Nov;48(11):1436-1442. doi: 10.1038/ng.3671. Epub 2016 Sep 19.
2
Transcription rate and transcript length drive formation of chromosomal interaction domain boundaries.转录速率和转录本长度驱动染色体相互作用结构域边界的形成。
EMBO J. 2016 Jul 15;35(14):1582-95. doi: 10.15252/embj.201593561. Epub 2016 Jun 10.
3
Epigenetic balance of gene expression by Polycomb and COMPASS families.
丹在神经母细胞中形成凝聚物,并调节体内的核架构和祖细胞的能力。
Nat Commun. 2024 Jun 14;15(1):5097. doi: 10.1038/s41467-024-49326-6.
4
The scales, mechanisms, and dynamics of the genome architecture.基因组结构的尺度、机制和动态。
Sci Adv. 2024 Apr 12;10(15):eadm8167. doi: 10.1126/sciadv.adm8167. Epub 2024 Apr 10.
5
RNA polymerases reshape chromatin and coordinate transcription on individual fibers.RNA聚合酶重塑染色质并协调单个纤维上的转录。
bioRxiv. 2023 Dec 23:2023.12.22.573133. doi: 10.1101/2023.12.22.573133.
6
A feedback loop between heterochromatin and the nucleopore complex controls germ-cell-to-oocyte transition during Drosophila oogenesis.异染色质和核孔复合物之间的反馈环控制果蝇卵子发生过程中的生殖细胞到卵母细胞的转变。
Dev Cell. 2023 Nov 20;58(22):2580-2596.e6. doi: 10.1016/j.devcel.2023.08.014. Epub 2023 Sep 5.
7
Setting the stage for development: the maternal-to-zygotic transition in Drosophila.为发育奠定基础:果蝇中的母体到合子过渡。
Genetics. 2023 Oct 4;225(2). doi: 10.1093/genetics/iyad142.
8
Mapping robust multiscale communities in chromosome contact networks.在染色体接触网络中映射稳健的多尺度社区。
Sci Rep. 2023 Aug 10;13(1):12979. doi: 10.1038/s41598-023-39522-7.
9
Targeted down-regulation of ameliorates tau-induced deficits in .对……的靶向下调改善了tau蛋白诱导的……缺陷。 (注:原文信息不完整,翻译可能存在一定局限性)
Genes Dis. 2023 Mar 24;10(6):2248-2251. doi: 10.1016/j.gendis.2023.02.009. eCollection 2023 Nov.
10
Mapping the semi-nested community structure of 3D chromosome contact networks.绘制三维染色体接触网络的半嵌套群落结构图谱。
PLoS Comput Biol. 2023 Jul 11;19(7):e1011185. doi: 10.1371/journal.pcbi.1011185. eCollection 2023 Jul.
通过 Polycomb 和 COMPASS 家族实现基因表达的表观遗传平衡。
Science. 2016 Jun 3;352(6290):aad9780. doi: 10.1126/science.aad9780.
4
Regulation of Genome Architecture and Function by Polycomb Proteins.多梳蛋白对基因组结构和功能的调控。
Trends Cell Biol. 2016 Jul;26(7):511-525. doi: 10.1016/j.tcb.2016.04.009. Epub 2016 May 16.
5
Molecular basis of PRC1 targeting to Polycomb response elements by PhoRC.PhoRC将PRC1靶向多梳反应元件的分子基础。
Genes Dev. 2016 May 1;30(9):1116-27. doi: 10.1101/gad.279141.116.
6
Architectural proteins Pita, Zw5,and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila.结构蛋白Pita、Zw5和ZIPIC含有同二聚化结构域,并支持果蝇中特定的长程相互作用。
Nucleic Acids Res. 2016 Sep 6;44(15):7228-41. doi: 10.1093/nar/gkw371. Epub 2016 May 2.
7
Chromosome conformation capture technologies and their impact in understanding genome function.染色体构象捕获技术及其在理解基因组功能方面的影响。
Chromosoma. 2017 Feb;126(1):33-44. doi: 10.1007/s00412-016-0593-6. Epub 2016 Apr 30.
8
Principal component analysis: a review and recent developments.主成分分析:综述与最新进展
Philos Trans A Math Phys Eng Sci. 2016 Apr 13;374(2065):20150202. doi: 10.1098/rsta.2015.0202.
9
Determinants of Chromosome Architecture: Insulator Pairing in cis and in trans.染色体结构的决定因素:顺式和反式中的绝缘子配对
PLoS Genet. 2016 Feb 24;12(2):e1005889. doi: 10.1371/journal.pgen.1005889. eCollection 2016 Feb.
10
Super-resolution imaging reveals distinct chromatin folding for different epigenetic states.超分辨率成像揭示了不同表观遗传状态下独特的染色质折叠。
Nature. 2016 Jan 21;529(7586):418-22. doi: 10.1038/nature16496. Epub 2016 Jan 13.