Anantharaman Aparna, Tripathi Vidisha, Khan Abid, Yoon Je-Hyun, Singh Deepak K, Gholamalamdari Omid, Guang Shuomeng, Ohlson Johan, Wahlstedt Helene, Öhman Marie, Jantsch Michael F, Conrad Nicholas K, Ma Jian, Gorospe Myriam, Prasanth Supriya G, Prasanth Kannanganattu V
Department of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, 601 S Goodwin Avenue, Urbana, IL 61801, USA.
Laboratory of Genetics, National Institute of Aging-Intramural Research program, NIH, Baltimore, MD 21224, USA.
Nucleic Acids Res. 2017 Apr 20;45(7):4189-4201. doi: 10.1093/nar/gkw1304.
Adenosine deaminases acting on RNA (ADARs) catalyze the editing of adenosine residues to inosine (A-to-I) within RNA sequences, mostly in the introns and UTRs (un-translated regions). The significance of editing within non-coding regions of RNA is poorly understood. Here, we demonstrate that association of ADAR2 with RNA stabilizes a subset of transcripts. ADAR2 interacts with and edits the 3΄UTR of nuclear-retained Cat2 transcribed nuclear RNA (Ctn RNA). In absence of ADAR2, the abundance and half-life of Ctn RNA are significantly reduced. Furthermore, ADAR2-mediated stabilization of Ctn RNA occurred in an editing-independent manner. Unedited Ctn RNA shows enhanced interaction with the RNA-binding proteins HuR and PARN [Poly(A) specific ribonuclease deadenylase]. HuR and PARN destabilize Ctn RNA in absence of ADAR2, indicating that ADAR2 stabilizes Ctn RNA by antagonizing its degradation by PARN and HuR. Transcriptomic analysis identified other RNAs that are regulated by a similar mechanism. In summary, we identify a regulatory mechanism whereby ADAR2 enhances target RNA stability by limiting the interaction of RNA-destabilizing proteins with their cognate substrates.
作用于RNA的腺苷脱氨酶(ADARs)催化RNA序列中的腺苷残基编辑为肌苷(A-to-I),主要发生在内含子和非翻译区(UTR)。RNA非编码区内编辑的意义尚不清楚。在这里,我们证明ADAR2与RNA的结合稳定了一部分转录本。ADAR2与核保留的Cat2转录核RNA(Ctn RNA)的3΄UTR相互作用并对其进行编辑。在没有ADAR2的情况下,Ctn RNA的丰度和半衰期显著降低。此外,ADAR2介导的Ctn RNA稳定化以一种不依赖编辑的方式发生。未编辑的Ctn RNA与RNA结合蛋白HuR和PARN[聚(A)特异性核糖核酸酶去腺苷酸化酶]的相互作用增强。在没有ADAR2的情况下,HuR和PARN会使Ctn RNA不稳定,这表明ADAR2通过拮抗PARN和HuR对Ctn RNA的降解来使其稳定。转录组分析确定了其他受类似机制调控的RNA。总之,我们确定了一种调控机制,即ADAR2通过限制RNA不稳定蛋白与其同源底物的相互作用来增强靶RNA的稳定性。