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本文引用的文献

1
MALDI-TOF mass spectrometry for differentiation between Streptococcus pneumoniae and Streptococcus pseudopneumoniae.用于区分肺炎链球菌和伪肺炎链球菌的基质辅助激光解吸电离飞行时间质谱分析
Diagn Microbiol Infect Dis. 2016 May;85(1):9-11. doi: 10.1016/j.diagmicrobio.2016.01.012. Epub 2016 Jan 22.
2
Viridans Group Streptococci clinical isolates: MALDI-TOF mass spectrometry versus gene sequence-based identification.草绿色链球菌临床分离株:基质辅助激光解吸电离飞行时间质谱法与基于基因序列的鉴定方法比较
PLoS One. 2015 Mar 17;10(3):e0120502. doi: 10.1371/journal.pone.0120502. eCollection 2015.
3
Comparison of species identification of endocarditis associated viridans streptococci using rnpB genotyping and 2 MALDI-TOF systems.使用rnpB基因分型和2种基质辅助激光解吸电离飞行时间质谱(MALDI-TOF)系统对心内膜炎相关草绿色链球菌进行菌种鉴定的比较
Diagn Microbiol Infect Dis. 2015 Apr;81(4):240-5. doi: 10.1016/j.diagmicrobio.2014.12.007. Epub 2014 Dec 27.
4
Identification of the 'Streptococcus anginosus group' by matrix-assisted laser desorption ionization--time-of-flight mass spectrometry.基质辅助激光解吸电离-飞行时间质谱法鉴定咽峡炎链球菌群。
J Med Microbiol. 2014 Sep;63(Pt 9):1143-1147. doi: 10.1099/jmm.0.076653-0. Epub 2014 Jun 10.
5
Evaluation of two matrix-assisted laser desorption ionization-time of flight mass spectrometry systems for identification of viridans group streptococci.评价两种基质辅助激光解吸电离飞行时间质谱系统对草绿色链球菌的鉴定。
Eur J Clin Microbiol Infect Dis. 2014 May;33(5):779-88. doi: 10.1007/s10096-013-2012-8. Epub 2013 Nov 8.
6
The pathogenicity of the Streptococcus genus.链球菌属的致病性。
Eur J Clin Microbiol Infect Dis. 2013 Nov;32(11):1361-76. doi: 10.1007/s10096-013-1914-9. Epub 2013 Jul 3.
7
Streptococcus dentisani sp. nov., a novel member of the mitis group.齿双歧链球菌,栖牙密螺旋体群的一个新成员。
Int J Syst Evol Microbiol. 2014 Jan;64(Pt 1):60-65. doi: 10.1099/ijs.0.054098-0. Epub 2013 Sep 4.
8
Performance of the Vitek MS v2.0 system in distinguishing Streptococcus pneumoniae from nonpneumococcal species of the Streptococcus mitis group.Vitek MS v2.0 系统在区分肺炎链球菌与米氏链球菌属中非肺炎链球菌种的性能。
J Clin Microbiol. 2013 Sep;51(9):3079-82. doi: 10.1128/JCM.00824-13. Epub 2013 Jun 19.
9
Multicenter evaluation of the Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system for identification of Gram-positive aerobic bacteria.多中心评估 Vitek MS 基质辅助激光解吸电离飞行时间质谱系统用于鉴定革兰阳性需氧菌。
J Clin Microbiol. 2013 Jul;51(7):2225-31. doi: 10.1128/JCM.00682-13. Epub 2013 May 8.
10
Identification of clinical Streptococcus pneumoniae isolates among other alpha and nonhemolytic streptococci by use of the Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system.采用 Vitek MS 基质辅助激光解吸电离飞行时间质谱系统鉴定其他甲型和非溶血性链球菌中的临床肺炎链球菌分离株。
J Clin Microbiol. 2013 Jun;51(6):1861-7. doi: 10.1128/JCM.03069-12. Epub 2013 Apr 10.

使用改进的基质辅助激光解吸电离生物分型数据库内容和新型结果解读算法,基质辅助激光解吸电离生物分型技术对肺炎链球菌和其他缓症链球菌群链球菌的鉴别能力得到提高。

Improved Differentiation of Streptococcus pneumoniae and Other S. mitis Group Streptococci by MALDI Biotyper Using an Improved MALDI Biotyper Database Content and a Novel Result Interpretation Algorithm.

作者信息

Harju Inka, Lange Christoph, Kostrzewa Markus, Maier Thomas, Rantakokko-Jalava Kaisu, Haanperä Marjo

机构信息

Clinical Microbiology Laboratory, Turku University Hospital, Turku, Finland

Bruker Daltonik GmbH, Bremen, Germany.

出版信息

J Clin Microbiol. 2017 Mar;55(3):914-922. doi: 10.1128/JCM.01990-16. Epub 2017 Jan 4.

DOI:10.1128/JCM.01990-16
PMID:28053215
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5328460/
Abstract

Reliable distinction of and viridans group streptococci is important because of the different pathogenic properties of these organisms. Differentiation between and closely related species group streptococci has always been challenging, even when using such modern methods as 16S rRNA gene sequencing or matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry. In this study, a novel algorithm combined with an enhanced database was evaluated for differentiation between and species group streptococci. One hundred one clinical species group streptococcal strains and 188 clinical strains were identified by both the standard MALDI Biotyper database alone and that combined with a novel algorithm. The database update from 4,613 strains to 5,627 strains drastically improved the differentiation of and species group streptococci: when the new database version containing 5,627 strains was used, only one of the 101 species group isolates was misidentified as , whereas 66 of them were misidentified as when the earlier 4,613-strain MALDI Biotyper database version was used. The updated MALDI Biotyper database combined with the novel algorithm showed even better performance, producing no misidentifications of the species group strains as All strains were correctly identified as with both the standard MALDI Biotyper database and the standard MALDI Biotyper database combined with the novel algorithm. This new algorithm thus enables reliable differentiation between pneumococci and other species group streptococci with the MALDI Biotyper.

摘要

由于这些微生物具有不同的致病特性,可靠区分肺炎链球菌和草绿色链球菌群很重要。区分肺炎链球菌和密切相关的草绿色链球菌群一直具有挑战性,即使使用16S rRNA基因测序或基质辅助激光解吸电离飞行时间(MALDI-TOF)质谱等现代方法也是如此。在本研究中,评估了一种结合增强数据库的新算法用于区分肺炎链球菌和草绿色链球菌群。通过单独使用标准MALDI Biotyper数据库以及将其与新算法相结合,对101株临床草绿色链球菌群菌株和188株临床肺炎链球菌菌株进行了鉴定。数据库从4613株更新到5627株极大地改善了肺炎链球菌和草绿色链球菌群的区分:当使用包含5627株的新数据库版本时,101株草绿色链球菌群分离株中只有1株被误鉴定为肺炎链球菌,而使用早期4613株的MALDI Biotyper数据库版本时,其中66株被误鉴定为肺炎链球菌。更新后的MALDI Biotyper数据库与新算法相结合表现出更好的性能,没有将草绿色链球菌群菌株误鉴定为肺炎链球菌。所有肺炎链球菌菌株使用标准MALDI Biotyper数据库以及与新算法相结合的标准MALDI Biotyper数据库均被正确鉴定为肺炎链球菌。因此,这种新算法能够通过MALDI Biotyper可靠地区分肺炎球菌和其他草绿色链球菌群。