38株戈登氏菌属噬菌体的全基因组序列
Complete Genome Sequences of 38 Gordonia sp. Bacteriophages.
作者信息
Pope Welkin H, Montgomery Matthew T, Bonilla J Alfred, Dejong Randall, Garlena Rebecca A, Guerrero Bustamante Carlos, Klyczek Karen K, Russell Daniel A, Wertz John T, Jacobs-Sera Deborah, Hatfull Graham F
机构信息
Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
出版信息
Genome Announc. 2017 Jan 5;5(1):e01143-16. doi: 10.1128/genomeA.01143-16.
Abstract
We report here the genome sequences of 38 newly isolated bacteriophages using Gordonia terrae 3612 (ATCC 25594) and Gordonia neofelifaecis NRRL59395 as bacterial hosts. All of the phages are double-stranded DNA (dsDNA) tail phages with siphoviral morphologies, with genome sizes ranging from 17,118 bp to 93,843 bp and spanning considerable nucleotide sequence diversity.
摘要
我们在此报告以地戈登氏菌3612（ATCC 25594）和新猫粪便戈登氏菌NRRL59395作为细菌宿主新分离出的38种噬菌体的基因组序列。所有噬菌体均为具有长尾噬菌体形态的双链DNA（dsDNA）噬菌体，基因组大小从17,118碱基对到93,843碱基对不等，且具有相当大的核苷酸序列多样性。
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3
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4
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6
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7
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