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吸盘甲鲶(Pterygoplichthys anisitsi,甲鲶科)的肝脏转录组:防御基因家族扩增的鉴定

The liver transcriptome of suckermouth armoured catfish (Pterygoplichthys anisitsi, Loricariidae): Identification of expansions in defensome gene families.

作者信息

Parente Thiago E, Moreira Daniel A, Magalhães Maithê G P, de Andrade Paula C C, Furtado Carolina, Haas Brian J, Stegeman John J, Hahn Mark E

机构信息

Laboratório de Toxicologia Ambiental, Escola Nacional de Saúde Pública (ENSP), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro 21040-900, Brasil; Laboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz (IOC), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro 21040-900, Brasil; Woods Hole Oceanographic Institution (WHOI), Woods Hole, MA 02543, USA.

Laboratório de Toxicologia Ambiental, Escola Nacional de Saúde Pública (ENSP), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro 21040-900, Brasil.

出版信息

Mar Pollut Bull. 2017 Feb 15;115(1-2):352-361. doi: 10.1016/j.marpolbul.2016.12.012. Epub 2017 Jan 4.

DOI:10.1016/j.marpolbul.2016.12.012
PMID:28062095
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5310677/
Abstract

Pterygoplichthys is a genus of related suckermouth armoured catfishes native to South America, which have invaded tropical and subtropical regions worldwide. Physiological features, including an augmented resistance to organic xenobiotics, may have aided their settlement in foreign habitats. The liver transcriptome of Pterygoplichthys anisitsi was sequenced and used to characterize the diversity of mRNAs potentially involved in the responses to natural and anthropogenic chemicals. In total, 66,642 transcripts were assembled. Among the identified defensome genes, cytochromes P450 (CYP) were the most abundant, followed by sulfotransferases (SULT), nuclear receptors (NR) and ATP binding cassette transporters (ABC). A novel expansion in the CYP2Y subfamily was identified, as well as an independent expansion of the CYP2AAs. Two expansions were also observed among SULT1. Thirty-two transcripts were classified into twelve subfamilies of NR, while 21 encoded ABC transporters. The diversity of defensome transcripts sequenced herein could contribute to this species' resistance to organic xenobiotics.

摘要

翼甲鲶属是一类原产于南美洲的吸口甲鲶,现已入侵全球热带和亚热带地区。包括对有机异生素增强的抗性在内的生理特征,可能有助于它们在异域栖息地定居。对翼甲鲶的肝脏转录组进行了测序,并用于表征可能参与对天然和人为化学物质反应的mRNA的多样性。总共组装了66,642个转录本。在鉴定出的防御组基因中,细胞色素P450(CYP)最为丰富,其次是磺基转移酶(SULT)、核受体(NR)和ATP结合盒转运蛋白(ABC)。在CYP2Y亚家族中发现了一个新的扩增,以及CYP2AA的独立扩增。在SULT1中也观察到两次扩增。32个转录本被分类到NR的12个亚家族中,而21个编码ABC转运蛋白。本文测序的防御组转录本的多样性可能有助于该物种对有机异生素的抗性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc3b/5310677/beac7526747b/nihms842633f6.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc3b/5310677/55fb86c7cff3/nihms842633f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc3b/5310677/beac7526747b/nihms842633f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc3b/5310677/241db60b52a6/nihms842633f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc3b/5310677/50e8c776a1d4/nihms842633f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc3b/5310677/d7ca0a6ba075/nihms842633f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc3b/5310677/1e4d12082df8/nihms842633f4.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc3b/5310677/beac7526747b/nihms842633f6.jpg

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